View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20233_low_6 (Length: 366)

Name: NF20233_low_6
Description: NF20233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20233_low_6
NF20233_low_6
[»] chr4 (2 HSPs)
chr4 (13-350)||(41108042-41108379)
chr4 (131-198)||(7600923-7600990)
[»] chr7 (6 HSPs)
chr7 (13-269)||(34913822-34914078)
chr7 (19-269)||(34906247-34906497)
chr7 (13-334)||(35702299-35702607)
chr7 (85-207)||(33032677-33032799)
chr7 (85-207)||(33120237-33120359)
chr7 (85-204)||(1470600-1470719)
[»] chr5 (6 HSPs)
chr5 (85-205)||(10101036-10101156)
chr5 (80-205)||(9678699-9678824)
chr5 (85-205)||(10104839-10104959)
chr5 (85-205)||(10214390-10214510)
chr5 (131-204)||(21036232-21036305)
chr5 (131-204)||(20982827-20982899)
[»] scaffold0036 (1 HSPs)
scaffold0036 (24-144)||(19702-19822)
[»] chr6 (2 HSPs)
chr6 (131-201)||(26384421-26384491)
chr6 (153-212)||(22366684-22366743)
[»] chr3 (1 HSPs)
chr3 (144-204)||(5130615-5130675)
[»] chr8 (2 HSPs)
chr8 (144-204)||(1086910-1086970)
chr8 (118-202)||(7224365-7224449)
[»] scaffold0011 (1 HSPs)
scaffold0011 (15-60)||(17017-17062)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 41108042 - 41108379
Alignment:
Q  13 cagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtcttt 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108042 cagacagcgtgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtcttt 41108141  T
Q  113 gttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108142 gttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 41108241  T
Q  213 ctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggaccaaaagcttttttctgttgtatacttgcttataaaaaatgctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  41108242 ctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggactaaaagcttctttctgttgtatacttgcttataaaaaatgctt 41108341  T
Q  313 ttgactcttgaaagttccagctttataacaaagttagt 350  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41108342 ttgactcttgaaagttccagctttataacaaagttagt 41108379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 7600990 - 7600923
Alignment:
Q  131 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaa 198  Q
    ||||| ||| ||| ||||||||||||||||| | |||| | ||||||||||| ||||||| |||||||    
T  7600990 tgttcatgtttccctagaaatcaaggacacaattgtacaagcctatagaacaaatcctgtccaagtaa 7600923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 34913822 - 34914078
Alignment:
Q  13 cagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtcttt 112  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||     
T  34913822 cagacaacatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagccgttaatcacgctctgatcgcacggtcttc 34913921  T
Q  113 gttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 212  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34913922 attcatcatccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgacaattg 34914021  T
Q  213 ctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggac 269  Q
     |||||| |||||||||||||||||||||| | | ||| ||| ||| ||||||||||    
T  34914022 ttccacgtgtgtgttatataaacacttgagctgtgctaattttaaatgatgtgggac 34914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 34906497 - 34906247
Alignment:
Q  19 gcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtctttgttcat 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||  |||||    
T  34906497 gcatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagccgttaatcacgctctgatcgcacggtcttcattcat 34906398  T
Q  119 catccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattgctccac 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  34906397 catccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgacaattgttccac 34906298  T
Q  219 gcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggac 269  Q
    | |||||||||||||||||||||| | | ||| ||| ||| ||||||||||    
T  34906297 gtgtgtgttatataaacacttgagctgtgctaattttaaatgatgtgggac 34906247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 35702607 - 35702299
Alignment:
Q  13 cagacagcatgtgtctgagaacgatcatctacagcacaagattatg---tctcaacatgagaa---tcatctcagccattaatcacgctctgatcgcatg 106  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||   ||||||||||| |||||||||||||||||||| |    
T  35702607 cagacagcgtgtgtctgagaacgatcatctacagcacaagatgatgatgtctcaacatgagaagaatcatctcagccgttaatcacgctctgatcgcacg 35702508  T
Q  107 gtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtga 206  Q
    ||  |  ||||||||||     |||              || |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35702507 gttgtctttcatcatcc-----tat--------------aggaatcatagacacagtagtaccatcctatagaacagatcctgttcaagtaaggtcgtga 35702427  T
Q  207 ctattgctccacgcgtgtgttatataaacacttgagttcttctagtttcaaacgatgtgggaccaaaagcttttttctgttgt-atacttgcttataaaa 305  Q
    | | || | |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||| | |||||||||| ||||||| |||| |||    
T  35702426 ccaatgattcacgcgtgtgctatataaacatttgagttctgctagtttcaaacgatgtgggactaaaagcctgtttctgttgtaatacttggttat-aaa 35702328  T
Q  306 aatgcttttgactcttgaaagttccagct 334  Q
    || |||| |||||||||||| || |||||    
T  35702327 aacgcttctgactcttgaaaattgcagct 35702299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 33032677 - 33032799
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032677 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33032776  T
Q  185 tcctgttcaagtaaggtcgtgac 207  Q
    |||||||||||||||||||||||    
T  33032777 tcctgttcaagtaaggtcgtgac 33032799  T

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Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 33120237 - 33120359
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33120237 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33120336  T
Q  185 tcctgttcaagtaaggtcgtgac 207  Q
    |||||||||||||||||||||||    
T  33120337 tcctgttcaagtaaggtcgtgac 33120359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 1470600 - 1470719
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||| ||||||||| || |||| | |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1470600 ttaatcatgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaataga 1470699  T
Q  185 tcctgttcaagtaaggtcgt 204  Q
    || |||||||||||||||||    
T  1470700 tcatgttcaagtaaggtcgt 1470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 10101036 - 10101156
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||||||||||||| || |||| | |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10101036 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 10101135  T
Q  185 tcctgttcaagtaaggtcgtg 205  Q
    |||||||||||||||||||||    
T  10101136 tcctgttcaagtaaggtcgtg 10101156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 9678824 - 9678699
Alignment:
Q  80 agccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctataga 179  Q
    |||| ||||||||||||||||| ||  ||| |  ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9678824 agccgttaatcacgctctgatcacacagtcatgattcatccaccagacgtatgttcctgtctcctttgaaatcaaggacacagtagtacgatcctataga 9678725  T
Q  180 acagatcctgttcaagtaaggtcgtg 205  Q
    ||||||||||||||||||||||||||    
T  9678724 acagatcctgttcaagtaaggtcgtg 9678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 10104839 - 10104959
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||||||||||||| || |||| | |||||||  |||||| |||| |||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  10104839 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgctcctgtcttcttagaaatcaaggacacagtagtataatcctatagaacaga 10104938  T
Q  185 tcctgttcaagtaaggtcgtg 205  Q
    |||||||||||||||||||||    
T  10104939 tcctgttcaagtaaggtcgtg 10104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 10214510 - 10214390
Alignment:
Q  85 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 184  Q
    ||||||||||||||||| || ||||     |||||  |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  10214510 ttaatcacgctctgatcacacggtcacaactcatctaccagacatatgttcctatctccttagaaatcaaggacacagtagtacaatcctatagaacaga 10214411  T
Q  185 tcctgttcaagtaaggtcgtg 205  Q
    |||||||||||||||||||||    
T  10214410 tcctgttcaagtaaggtcgtg 10214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 21036232 - 21036305
Alignment:
Q  131 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 204  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21036232 tgtttctgtttccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 21036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 20982827 - 20982899
Alignment:
Q  131 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 204  Q
    ||||| || |||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||    
T  20982827 tgttcgtgcctccttagaaatcaaggatacaatagtacgatcctatagatcagatcctgttc-agtaaggtcgt 20982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 19822 - 19702
Alignment:
Q  24 tgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtctttgttcatcatcc 123  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||     
T  19822 tgtctgagaacgattatctacagcacaagatgatgtcttaacatgagaatcatctcagccgttaatcacgctctgatctcacggtcttcgttcatcatct 19723  T
Q  124 agacatatgttcctgtctcct 144  Q
    |||||||||||||||||||||    
T  19722 agacatatgttcctgtctcct 19702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 26384491 - 26384421
Alignment:
Q  131 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 201  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26384491 tgtttctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 26384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 22366743 - 22366684
Alignment:
Q  153 aaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22366743 aaggacacagtagtacgatcctatagaacagatcctgttcaaataaggtcgtgactattg 22366684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 5130675 - 5130615
Alignment:
Q  144 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 204  Q
    ||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||    
T  5130675 ttagaaatcaaggacacagtaatacgatcctataaaagagatcttgttcaagtaaggtcgt 5130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 1086910 - 1086970
Alignment:
Q  144 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 204  Q
    |||||||||||||||||| |||||||||| |||| || ||||| |||||||||||||||||    
T  1086910 ttagaaatcaaggacacaatagtacgatcttataaaatagatcttgttcaagtaaggtcgt 1086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 7224449 - 7224365
Alignment:
Q  118 tcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtc 202  Q
    |||||||||  ||||||| |||||||||||||||||||||| || |  ||||||||||||||||| ||| | || ||||||||||    
T  7224449 tcatccagatttatgttcatgtctccttagaaatcaaggacgcaatgttacgatcctatagaacaaatcatatttaagtaaggtc 7224365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 17062 - 17017
Alignment:
Q  15 gacagcatgtgtctgagaacgatcatctacagcacaagattatgtc 60  Q
    ||||| ||||||||||||||||||||| |||| ||||||| |||||    
T  17062 gacagtatgtgtctgagaacgatcatccacagtacaagatgatgtc 17017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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