View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20233_low_8 (Length: 332)
Name: NF20233_low_8
Description: NF20233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20233_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 42743902 - 42744204
Alignment:
| Q |
18 |
atctgaaaatagttgttaatgagttcaaaattattttagagcctcatagcatctatgcaactctcacatttcataaatgttcctctgtgacacatattct |
117 |
Q |
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| T |
42743902 |
atctgaaaatagttgttaatgagttcaaaattattttagagcctcatagcatctatgcaactctcacatttcataaatgttcctctgtgacacatatttt |
42744001 |
T |
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| Q |
118 |
tttttacagggactgtgagactactatactaattaacaaatgaaaatcatgtgattagccttatttgatttccaacagtatacaaaggcattattaaatt |
217 |
Q |
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| T |
42744002 |
tttttacagggactgtgacactactatactaattaacaaatgaaaatcatgtgattagccttatttgatttccaacagtatacaaaggcattattaaatt |
42744101 |
T |
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| Q |
218 |
tagtggtaattatgagtccaaccactagactacttggccaatagcnnnnnnnnnnntagtggtaattaagagcattagtcctactcctacatctgagttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42744102 |
tagtggtaattatgagtccaaccactagactacttgaccaatagcaaaaaaaaaa--agtggtaattaagagcattagtcctactcctacatctgagttt |
42744199 |
T |
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| Q |
318 |
ctgtg |
322 |
Q |
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||||| |
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| T |
42744200 |
ctgtg |
42744204 |
T |
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