View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20233_low_9 (Length: 315)
Name: NF20233_low_9
Description: NF20233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20233_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 28695825 - 28696123
Alignment:
| Q |
1 |
cttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaacagacaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28695825 |
cttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtgtcaatttccattacttccgaacagacaact |
28695924 |
T |
|
| Q |
101 |
atgcaattgttatatgtatgcaagcttgtttaaacttccatagaaaattgtcatctttgtggttgttttatttcttgaagctatggactaactgttgttt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28695925 |
atgcaattgttatatgtatgcctgcttgtttaaacttccatagaaaattgtcatctttgtggttgttttatttcttgaagctatggactaactgttgttt |
28696024 |
T |
|
| Q |
201 |
cttttcttctttaaattagtgtttaattaattttcctttggtcaaaacaagatgaatgaaatcattaaatctatttgcaacctttaagcagtattgaatg |
300 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
28696025 |
cctttcttcattaaattagtgtttaattaattttcctttggtcaaaacaagatgaatgaaatcattaaatctatttgcaacc-ttaatcagtattgaatg |
28696123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 140 - 300
Target Start/End: Original strand, 28673749 - 28673908
Alignment:
| Q |
140 |
atagaaaattgtcatctttgtggttgttttatttcttgaagctatggactaactgttgtttcttttcttctttaaattagtgtttaattaattttccttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28673749 |
atagaaaattgtcatctttgtggttgttttatttcttgaagctatggactaacagttgtttcctttcttcattaaattagtgtttaattaattttccttt |
28673848 |
T |
|
| Q |
240 |
ggtcaaaacaagatgaatgaaatcattaaatctatttgcaacctttaagcagtattgaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
28673849 |
ggtcaaaacaagatgaatgaaatcattaaatctatttgcaacc-ttaatcagtattgaatg |
28673908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28673575 - 28673666
Alignment:
| Q |
1 |
cttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaac |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28673575 |
cttttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaac |
28673666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 29021545 - 29021442
Alignment:
| Q |
7 |
ttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaa-cagacaactatgca |
105 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||| |||||| ||||| |||||||| |
|
|
| T |
29021545 |
ttgtcctagaataaccattgcctgcattgcttctgcttaccgcaagagaccaatagtgacggtatcatattccattacctccgaaccagacgactatgca |
29021446 |
T |
|
| Q |
106 |
attg |
109 |
Q |
| |
|
|||| |
|
|
| T |
29021445 |
attg |
29021442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 29021346 - 29021271
Alignment:
| Q |
211 |
ttaaattagtgtttaattaatttt-cctttggtcaa-aacaagatgaatgaaatcattaaatctatttgcaacctt |
284 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
29021346 |
ttaacttactgtttaattaattttgcctttggtcaagaacaagatgaaccaaatgattaaatctatttgcaacctt |
29021271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University