View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20234_low_2 (Length: 457)

Name: NF20234_low_2
Description: NF20234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20234_low_2
NF20234_low_2
[»] chr4 (16 HSPs)
chr4 (16-452)||(8040364-8040801)
chr4 (16-217)||(8035174-8035375)
chr4 (20-274)||(9137850-9138104)
chr4 (16-142)||(8417442-8417568)
chr4 (19-217)||(8411849-8412041)
chr4 (156-217)||(8417597-8417658)
chr4 (283-337)||(8034951-8035005)
chr4 (228-286)||(8035037-8035095)
chr4 (17-119)||(8404893-8404995)
chr4 (17-134)||(8358202-8358319)
chr4 (161-217)||(46191029-46191085)
chr4 (171-217)||(8405056-8405102)
chr4 (236-286)||(8417744-8417794)
chr4 (16-117)||(8419501-8419602)
chr4 (401-442)||(9137587-9137628)
chr4 (77-119)||(43142329-43142371)
[»] chr2 (1 HSPs)
chr2 (16-207)||(33085012-33085192)
[»] chr7 (2 HSPs)
chr7 (161-217)||(5477606-5477662)
chr7 (228-286)||(5477771-5477827)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 8040801 - 8040364
Alignment:
Q  16 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8040801 aatatccatataataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 8040702  T
Q  116 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8040701 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcagtgcctagag 8040602  T
Q  216 ttcaacttggtcgcttttgtttttgattattttgaggttgatgcctcaaccttttttctactgttggttttcaaaacaattgttctgcttttttgtatat 315  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8040601 ttcaagttggtagcttttgtttttgattattttgaggttgatgcctcaaccttttttctactgttggttttcaaaacaattgttctgtttttttgtatat 8040502  T
Q  316 tgtttgctaaaaacatatgaagtgaagaattgtaatacgtggtcaacatctgttgaccttgtacaatttgtgatctcagaaccattctcatctctctaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8040501 tgtttgctaaaaacatatgaagtgaagaattgtaatacgtggtcaacatctgttgaccttgtacaatttgtgatctcagaaccattctcatctctctaac 8040402  T
Q  416 taattatgactaatag-aacattgtaacatatatctgt 452  Q
    |||||||||||||||| || ||||||||||||||||||    
T  8040401 taattatgactaatagaaaaattgtaacatatatctgt 8040364  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 8035375 - 8035174
Alignment:
Q  16 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||   ||||||||||||||||| |||||||    
T  8035375 aatatccatttaataatgtctcctattcattcgaattgtgcaggtattcctcttaaatccaacttcgaagaatttgcaacctccacgctttgttagattg 8035276  T
Q  116 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagag 215  Q
    ||||||||||||||||||||| ||   ||| ||  |  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  8035275 gagttgtttatagtgcacaaggctccatatgcatgtgaggaacaagaaataatggaagtagtggaacacttgcttcaaaacactactttaatgcctagag 8035176  T
Q  216 tt 217  Q
    ||    
T  8035175 tt 8035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 9138104 - 9137850
Alignment:
Q  20 tccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggagt 119  Q
    |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||    
T  9138104 tccatttaataatgtctcttattcattcgaggtttgcaggaattcctcttaaatcccatttcgaagaaagtgcaacctccacgctttgttaaattggagt 9138005  T
Q  120 tgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctaga---gt 216  Q
    || |||||||||||  ||     ||| |||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||   ||    
T  9138004 tgcttatagtgcac--gc----atatgcagataagaaacaagaaataatggaaatagtggaacacttgcttcaaaacactacttcaatgactagagttgt 9137911  T
Q  217 tcaacttg---gtcgcttttgtttttgattattttgaggttgatgcctcaaccttttttct 274  Q
    |||| |||   || | |||||||||| ||||||||||||||||||||||||| ||||||||    
T  9137910 tcaagttggacgtaggttttgtttttcattattttgaggttgatgcctcaacgttttttct 9137850  T

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Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 8417442 - 8417568
Alignment:
Q  16 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 115  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  8417442 aatatccatttaataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcgcaacctccacgctttgttagattg 8417541  T
Q  116 gagttgtttatagtgcacaagcctttt 142  Q
    ||||||||||||||| |||||| ||||    
T  8417542 gagttgtttatagtgtacaagcatttt 8417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 8411849 - 8412041
Alignment:
Q  19 atccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggag 118  Q
    |||||||||||||||| ||||||| |||| |||||||||||| |||| ||||||| ||| |||||| ||    ||||||||||  |||| ||||||||||    
T  8411849 atccatttaataatgtatcctatttattcaaattgtgcaggacttcctcttaaatacaacttcgaaaaactttcaacctccacagtttgttagattggag 8411948  T
Q  119 ttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 217  Q
    ||| || ||||||||   | ||      || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411949 ttgcttgtagtgcacgcacatt------caaataaggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 8412041  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 8417597 - 8417658
Alignment:
Q  156 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  8417597 aacaagaaataatggaagtagtggaacacttgcttcaaaacacgacttcaatgcctagagtt 8417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 8035005 - 8034951
Alignment:
Q  283 ttttcaaaacaattgttctgcttttttgtatattgtttgctaaaaacatatgaag 337  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8035005 ttttcaaaacaattgttctgtttttttctatattgtttgctaaaaacatatgaag 8034951  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 8035095 - 8035037
Alignment:
Q  228 gcttttgtttttgattattttgaggttgatgcctcaaccttttttctactgttggtttt 286  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||    
T  8035095 gcttttgtttttcattattttgaggttcatgcctcaactttttttctgctgttggtttt 8035037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 8404893 - 8404995
Alignment:
Q  17 atatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattgg 116  Q
    |||||||||| | |||||||| |||||| || |||||||||||||  ||    |||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  8404893 atatccatttgaaaatgtctcatattcactctaattgtgcaggaacaccttgcaaatcttatttcgaagaaagtgcaacctccacactttgctagattgg 8404992  T
Q  117 agt 119  Q
    |||    
T  8404993 agt 8404995  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 8358319 - 8358202
Alignment:
Q  17 atatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattgg 116  Q
    |||||||||||| ||||||||| ||||| || |||||||||||| |  || |  ||||| ||||| |||||||| ||||||||| ||||| ||||| ||     
T  8358319 atatccatttaaaaatgtctccaattcactctaattgtgcaggagtggcgttctaatcccatttcaaagaaagctcaacctccatgcttttctagactga 8358220  T
Q  117 agttgtttatagtgcaca 134  Q
    ||| ||| ||||||||||    
T  8358219 agtcgttcatagtgcaca 8358202  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 46191085 - 46191029
Alignment:
Q  161 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 217  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  46191085 gaaataatggaagtagtggaacaattgcttcaaaacactatttcaatgcctaaagtt 46191029  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 8405056 - 8405102
Alignment:
Q  171 aagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 217  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  8405056 aagtagtggaacacttgcttcaaaacactactccaatgcctagagtt 8405102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 8417744 - 8417794
Alignment:
Q  236 ttttgattattttgaggttgatgcctcaaccttttttctactgttggtttt 286  Q
    |||| |||||||||||||| ||||||||||||||||||| | |||||||||    
T  8417744 ttttcattattttgaggttaatgcctcaaccttttttctgcggttggtttt 8417794  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 8419501 - 8419602
Alignment:
Q  16 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 115  Q
    |||||| |||| | ||||||||||||||| |  |||||||||||||  ||    |||||  ||||| ||||||| ||||||||||| |||||||||||||    
T  8419501 aatatcaatttgaaaatgtctcctattcactataattgtgcaggaacaccttgcaaatcttatttcaaagaaagtgcaacctccacactttgctagattg 8419600  T
Q  116 ga 117  Q
    ||    
T  8419601 ga 8419602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 9137628 - 9137587
Alignment:
Q  401 tctcatctctctaactaattatgactaatagaacattgtaac 442  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  9137628 tctcatctctataactaattatgactaatagaaaattgtaac 9137587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 43142371 - 43142329
Alignment:
Q  77 atttcgaagaaagcgcaacctccacgctttgctagattggagt 119  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||    
T  43142371 atttcaaagaaagtgcaacctccacactttgctagattggagt 43142329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 33085012 - 33085192
Alignment:
Q  16 aatatccatttaataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattg 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||     ||  ||       |  |||||||    
T  33085012 aatatccatttaataatgtctcttattcattcgaattgtgcaggaattcctcttaaatccaacttcgaagaat----aatgtc-------tcttagattg 33085100  T
Q  116 gagttgtttatagtgcacaagcctttttatccagatagggaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaat 207  Q
    |||||||||||||||||||||  | | | | |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33085101 gagttgtttatagtgcacaagaatctatttgcagataaggaacaagaaataatggaagcagtgaaacacttgcttcaaaacactacttcaat 33085192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 5477606 - 5477662
Alignment:
Q  161 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 217  Q
    |||||||| ||| | ||| ||||||||||||||||||||||| ||||||||||||||    
T  5477606 gaaataatcgaaattgtggaacacttgcttcaaaacactactccaatgcctagagtt 5477662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 5477771 - 5477827
Alignment:
Q  228 gcttttgtttttgattattttgaggttgatgcctcaaccttttttctactgttggtttt 286  Q
    |||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||||||    
T  5477771 gcttttgtttttcattatt--gagcttgatgcctcaactttttttcttctgttggtttt 5477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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