View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20234_low_3 (Length: 342)

Name: NF20234_low_3
Description: NF20234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20234_low_3
NF20234_low_3
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-331)||(34494-34824)
scaffold0038 (25-331)||(27239-27547)
scaffold0038 (25-329)||(116589-116893)
scaffold0038 (92-331)||(42826-43065)
[»] chr6 (62 HSPs)
chr6 (1-331)||(28234333-28234663)
chr6 (1-331)||(28185135-28185465)
chr6 (1-331)||(28180883-28181213)
chr6 (25-331)||(28226741-28227049)
chr6 (25-329)||(28325274-28325578)
chr6 (92-331)||(28242664-28242903)
chr6 (75-331)||(28297801-28298057)
chr6 (75-331)||(28514016-28514272)
chr6 (94-329)||(27611092-27611327)
chr6 (97-320)||(27724944-27725167)
chr6 (97-314)||(28786143-28786360)
chr6 (97-314)||(28792264-28792481)
chr6 (97-329)||(26342024-26342256)
chr6 (97-329)||(27718469-27718701)
chr6 (109-320)||(26802319-26802530)
chr6 (130-329)||(27593110-27593309)
chr6 (130-331)||(27678844-27679045)
chr6 (106-331)||(27698582-27698807)
chr6 (97-329)||(27604795-27605027)
chr6 (127-320)||(28781034-28781227)
chr6 (97-299)||(26884028-26884230)
chr6 (97-328)||(28098460-28098691)
chr6 (130-293)||(31284186-31284349)
chr6 (97-327)||(26893563-26893793)
chr6 (197-331)||(27677702-27677836)
chr6 (148-320)||(26646395-26646567)
chr6 (148-320)||(26752363-26752535)
chr6 (127-302)||(26622871-26623046)
chr6 (127-302)||(26728849-26729024)
chr6 (98-329)||(28139407-28139638)
chr6 (97-331)||(26936959-26937193)
chr6 (97-299)||(27229097-27229299)
chr6 (197-299)||(27338185-27338287)
chr6 (197-299)||(27398925-27399027)
chr6 (197-331)||(27706490-27706624)
chr6 (127-299)||(25579614-25579786)
chr6 (206-331)||(28149912-28150036)
chr6 (210-329)||(29826005-29826124)
chr6 (97-302)||(26861481-26861686)
chr6 (239-299)||(26142872-26142932)
chr6 (199-299)||(26655956-26656056)
chr6 (199-299)||(26761927-26762027)
chr6 (151-299)||(27531317-27531465)
chr6 (115-234)||(25071542-25071661)
chr6 (197-292)||(25481707-25481802)
chr6 (114-331)||(2184170-2184387)
chr6 (206-302)||(2184872-2184968)
chr6 (115-235)||(27214300-27214420)
chr6 (115-235)||(27234808-27234928)
chr6 (239-299)||(25538547-25538607)
chr6 (115-235)||(26811392-26811512)
chr6 (178-234)||(26959111-26959167)
chr6 (197-299)||(26055891-26055993)
chr6 (197-299)||(26075861-26075963)
chr6 (150-184)||(28149593-28149627)
chr6 (178-291)||(26635636-26635749)
chr6 (178-291)||(26741602-26741715)
chr6 (178-235)||(27665301-27665358)
chr6 (177-257)||(26617271-26617351)
chr6 (177-257)||(26723199-26723279)
chr6 (271-331)||(26823879-26823939)
chr6 (92-224)||(26949521-26949653)
[»] scaffold0019 (1 HSPs)
scaffold0019 (35-331)||(58370-58666)
[»] chr2 (1 HSPs)
chr2 (99-327)||(3279555-3279783)
[»] scaffold0349 (2 HSPs)
scaffold0349 (97-314)||(3527-3744)
scaffold0349 (106-320)||(14454-14668)
[»] chr4 (6 HSPs)
chr4 (97-297)||(5091076-5091276)
chr4 (97-331)||(18731579-18731813)
chr4 (197-331)||(18724160-18724294)
chr4 (97-331)||(18655552-18655786)
chr4 (197-331)||(18679642-18679776)
chr4 (197-331)||(18699475-18699609)
[»] chr8 (2 HSPs)
chr8 (109-291)||(31903728-31903910)
chr8 (197-331)||(29273858-29273992)
[»] scaffold1254 (1 HSPs)
scaffold1254 (127-314)||(22-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (127-314)||(7420-7607)
[»] scaffold0277 (2 HSPs)
scaffold0277 (97-312)||(4778-4993)
scaffold0277 (127-314)||(13737-13924)
[»] chr1 (2 HSPs)
chr1 (197-331)||(268432-268566)
chr1 (248-331)||(28127754-28127837)


Alignment Details
Target: scaffold0038 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 34494 - 34824
Alignment:
Q  1 tatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttctt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  34494 tatacactcatctacgttttaacctctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttctt 34593  T
Q  101 ccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  34594 ctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaa 34693  T
Q  201 gggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcct 300  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34694 gggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcct 34793  T
Q  301 gtcttgtctatcaattatgctgcttcttcat 331  Q
    ||||||||||||||||||||| |||||||||    
T  34794 gtcttgtctatcaattatgcttcttcttcat 34824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 27239 - 27547
Alignment:
Q  25 tctcatactcttcttacttcctttttgttctctactctcat--gactctgcttcaatcatccgtctccccctcttcttccttctcctatggattcaccta 122  Q
    |||||||| ||| ||||||||||| | ||||||| ||||||  | || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  27239 tctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctcttatggattcaccta 27338  T
Q  123 tgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgat 222  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||| || | ||||||| | |||||||| ||||| ||| |||||    
T  27339 tgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgat 27438  T
Q  223 gacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctg 322  Q
    || |||||||||| |||||| |||||||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||     
T  27439 gatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgctt 27538  T
Q  323 cttcttcat 331  Q
    |||||||||    
T  27539 cttcttcat 27547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 116589 - 116893
Alignment:
Q  25 tctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatggattcacctatg 124  Q
    |||||||||||||| | ||||| ||| ||| ||||||||||| |||| |||||||||||| ||||  |||| |||||||| |||||||||||||||||||    
T  116589 tctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggattcacctatg 116688  T
Q  125 acgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatga 224  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| | || |||||||   ||| |||| |  ||||||||||||||    
T  116689 acgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatga 116788  T
Q  225 cagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgct 324  Q
    || ||| |||| | |||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||    
T  116789 caaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttct 116888  T
Q  325 tcttc 329  Q
    |||||    
T  116889 tcttc 116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 92 - 331
Target Start/End: Original strand, 42826 - 43065
Alignment:
Q  92 cctcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctct 191  Q
    |||| |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||| || |||||| | || |||    
T  42826 cctcctcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatct 42925  T
Q  192 ttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggatt 291  Q
    |||| | |||||||| | ||||||||||||||||||||| |||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  42926 ttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggatt 43025  T
Q  292 ttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  43026 ttcattcctgtcttgtctatcaattatgcttcttcttcat 43065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 62)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 28234333 - 28234663
Alignment:
Q  1 tatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttctt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  28234333 tatacactcatctacgttttaacctctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttctt 28234432  T
Q  101 ccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  28234433 ctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaa 28234532  T
Q  201 gggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcct 300  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28234533 gggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcct 28234632  T
Q  301 gtcttgtctatcaattatgctgcttcttcat 331  Q
    ||||||||||||||||||||| |||||||||    
T  28234633 gtcttgtctatcaattatgcttcttcttcat 28234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 28185135 - 28185465
Alignment:
Q  1 tatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttctt 100  Q
    ||||||||||||||| || | || ||||||||| |||||||||||||||| ||||||| ||||||| || |||||||||||||||||||| | || ||||    
T  28185135 tatacactcatccacattcttacttctcatactattcttacttcctttttattctctattctcatggctatgcttcaatcatccgtctcctcatcctctt 28185234  T
Q  101 ccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| || |||| |||||||||||||| ||||    
T  28185235 ccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagagctctttgtgacaa 28185334  T
Q  201 gggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcct 300  Q
    ||||||||  |||||||| |||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||||||     
T  28185335 gggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattccc 28185434  T
Q  301 gtcttgtctatcaattatgctgcttcttcat 331  Q
    ||||||||||||||||||||| |||||||||    
T  28185435 gtcttgtctatcaattatgcttcttcttcat 28185465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 28180883 - 28181213
Alignment:
Q  1 tatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttctt 100  Q
    ||||||||||||||| || | || ||||||||| |||||||||||||||| ||||||| ||||||| || |||||||||||||||||||| | || ||||    
T  28180883 tatacactcatccacattcttacttctcatactattcttacttcctttttattctctattctcatggctatgcttcaatcatccgtctcctcatcctctt 28180982  T
Q  101 ccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaa 200  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| || |||| |||||||||||||| ||||    
T  28180983 ccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagagctctttgtgacaa 28181082  T
Q  201 gggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcct 300  Q
    ||||||||  |||||||| |||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||||||     
T  28181083 gggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattccc 28181182  T
Q  301 gtcttgtctatcaattatgctgcttcttcat 331  Q
    ||||||||||||||||||||| |||||||||    
T  28181183 gtcttgtctatcaattatgcttcttcttcat 28181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 28226741 - 28227049
Alignment:
Q  25 tctcatactcttcttacttcctttttgttctctactctcat--gactctgcttcaatcatccgtctccccctcttcttccttctcctatggattcaccta 122  Q
    |||||||| ||| ||||||||||| | ||||||| ||||||  | || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  28226741 tctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctcttatggattcaccta 28226840  T
Q  123 tgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgat 222  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||| || | ||||||| | |||||||| ||||| ||| |||||    
T  28226841 tgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgat 28226940  T
Q  223 gacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctg 322  Q
    || |||||||||| |||||| |||||||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||     
T  28226941 gatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgctt 28227040  T
Q  323 cttcttcat 331  Q
    |||||||||    
T  28227041 cttcttcat 28227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 28325274 - 28325578
Alignment:
Q  25 tctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatggattcacctatg 124  Q
    |||||||||||||| | ||||| ||| ||| ||||||||||| |||| |||||||||||| ||||  |||| |||||||| |||||||||||||||||||    
T  28325274 tctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggattcacctatg 28325373  T
Q  125 acgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatga 224  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| | || |||||||   ||| |||| |  ||||||||||||||    
T  28325374 acgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatga 28325473  T
Q  225 cagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgct 324  Q
    || ||| |||| | |||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||    
T  28325474 caaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttct 28325573  T
Q  325 tcttc 329  Q
    |||||    
T  28325574 tcttc 28325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 92 - 331
Target Start/End: Original strand, 28242664 - 28242903
Alignment:
Q  92 cctcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctct 191  Q
    |||| |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||| || |||||| | || |||    
T  28242664 cctcctcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatct 28242763  T
Q  192 ttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggatt 291  Q
    |||| | |||||||| | ||||||||||||||||||||| |||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  28242764 ttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggatt 28242863  T
Q  292 ttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  28242864 ttcattcctgtcttgtctatcaattatgcttcttcttcat 28242903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 331
Target Start/End: Complemental strand, 28298057 - 28297801
Alignment:
Q  75 tcaatcatccgtctccccctcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaa 174  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||  |||||| || |    
T  28298057 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattgga 28297958  T
Q  175 actctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggcca 274  Q
    | |||| | | || |||||||   |||||||| | |||||||||||||||||||||||||  |||||| || |||||||||||||||||||| |||  ||    
T  28297957 aatctccacaaagatctttgtaggaagggaattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcaca 28297858  T
Q  275 ttgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||    
T  28297857 ttgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcat 28297801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 331
Target Start/End: Original strand, 28514016 - 28514272
Alignment:
Q  75 tcaatcatccgtctccccctcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaa 174  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||  |||||| || |    
T  28514016 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattgga 28514115  T
Q  175 actctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggcca 274  Q
    | |||| | | || |||||||   |||||||| | |||||||||||||||||||||||||  |||||| || |||||||||||||||||||| |||  ||    
T  28514116 aatctccacaaagatctttgtaggaagggaattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcaca 28514215  T
Q  275 ttgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||    
T  28514216 ttgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcat 28514272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 329
Target Start/End: Complemental strand, 27611327 - 27611092
Alignment:
Q  94 tcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctcttt 193  Q
    |||||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||| | || |||||| |  ||||||     
T  27611327 tcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 27611228  T
Q  194 gtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggatttt 293  Q
     | ||||||||||||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || |||||||||||    
T  27611227 ctgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttt 27611128  T
Q  294 cattcctgtcttgtctatcaattatgctgcttcttc 329  Q
     |||||||| || |||||||| |||||  |||||||    
T  27611127 tattcctgtgttttctatcaactatgcctcttcttc 27611092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 320
Target Start/End: Complemental strand, 27725167 - 27724944
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | ||||||||||||||||| || | |||||||||  | |||||||| | || |||||| |  ||||||  |     
T  27725167 tcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactg 27725068  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || ||||||||||| ||    
T  27725067 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttat 27724968  T
Q  297 tcctgtcttgtctatcaattatgc 320  Q
    |||||| || |||||||| |||||    
T  27724967 tcctgtgttttctatcaactatgc 27724944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 28786143 - 28786360
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||| | || |||||| |  ||||||  |     
T  28786143 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactg 28786242  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||| | ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| ||    
T  28786243 acaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttat 28786342  T
Q  297 tcctgtcttgtctatcaa 314  Q
    |||||| || ||||||||    
T  28786343 tcctgtgttttctatcaa 28786360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 28792264 - 28792481
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||| | || |||||| |  ||||||  |     
T  28792264 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactg 28792363  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||| | ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| ||    
T  28792364 acaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttat 28792463  T
Q  297 tcctgtcttgtctatcaa 314  Q
    |||||| || ||||||||    
T  28792464 tcctgtgttttctatcaa 28792481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 329
Target Start/End: Complemental strand, 26342256 - 26342024
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| ||||| ||||||||||| ||||| |||||||| | |||||| || | || ||||||||||||||||||||  | | ||||||||||||| |||     
T  26342256 tcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatctatagagctctatgtg 26342157  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||   ||| ||| ||||||||||||||| || |||||||  ||||| ||  |||| |||| ||||||| | || |||||||||||||| |||||||||||    
T  26342156 acggtggagtccgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcat 26342057  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttc 329  Q
    |||  | || || ||||| |||||| |||||||    
T  26342056 tccaattttctcaatcaactatgcttcttcttc 26342024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 329
Target Start/End: Complemental strand, 27718701 - 27718469
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| |||||| |||||||||| ||  | |||||||| |||||||| || | |||||||||  |  ||||||| | || |||||| |  ||||||  |     
T  27718701 tcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactg 27718602  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || ||||||||||| ||    
T  27718601 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttat 27718502  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttc 329  Q
    |||||| || |||||||| |||||  |||||||    
T  27718501 tcctgtgttttctatcaactatgcctcttcttc 27718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 26802319 - 26802530
Alignment:
Q  109 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatcc 208  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  | |||||| |  ||||||  | ||||||||||||    
T  26802319 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 26802418  T
Q  209 acaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtc 308  Q
    | ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | |||||||||||||| ||||| ||||| |||||||| || ||    
T  26802419 ataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgttttc 26802518  T
Q  309 tatcaattatgc 320  Q
    |||||| |||||    
T  26802519 tatcaactatgc 26802530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 329
Target Start/End: Complemental strand, 27593309 - 27593110
Alignment:
Q  130 ttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagag 229  Q
    ||||| ||||| ||||| ||||||||||| || ||||| || |  | |||||| |  ||||||  | ||||||||||| ||||||||||||||||||  |    
T  27593309 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatg 27593210  T
Q  230 agcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttc 329  Q
      |||| | ||||| ||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||| |||||  |||||||    
T  27593209 gtcttcaaagaggaaatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 331
Target Start/End: Original strand, 27678844 - 27679045
Alignment:
Q  130 ttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagag 229  Q
    ||||| ||||| ||||| ||||||||||| || ||||| || |  | |||||| |  ||||||  | ||||||||||| |||||||||||||| | |  |    
T  27678844 ttcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatg 27678943  T
Q  230 agcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttc 329  Q
      |||| | ||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||| |||||  |||||||    
T  27678944 gtcttcaaagaggagatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27679043  T
Q  330 at 331  Q
    ||    
T  27679044 at 27679045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 331
Target Start/End: Complemental strand, 27698807 - 27698582
Alignment:
Q  106 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaa 205  Q
    |||||||||||||| ||  | |||||| | |||||||| || | |||||||||  | |||||||| | || |||||| |  ||||||  | |||||||||    
T  27698807 tcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaa 27698708  T
Q  206 tccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtctt 305  Q
    |||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || ||||||||||| |||||||| ||    
T  27698707 tccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgtt 27698608  T
Q  306 gtctatcaattatgctgcttcttcat 331  Q
     ||| |||| |||||  |||||||||    
T  27698607 ttctctcaactatgcatcttcttcat 27698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 329
Target Start/End: Complemental strand, 27605027 - 27604795
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || ||||||| |||||| ||  | ||||||||||||||||| || | ||||||||| || |||||||| |  | |||||| |  ||||||  |     
T  27605027 tcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactg 27604928  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||||||||| || |||||||||||||| |  || |||||| ||||||||||||| |||||| ||||| | ||||||||||| || || |||||||| ||    
T  27604927 acaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttttat 27604828  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttc 329  Q
    |||||| || |||||||| |||||  |||||||    
T  27604827 tcctgtgttttctatcaaatatgcctcttcttc 27604795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 28781034 - 28781227
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    |||||||| |||||||| || | |||||||||| | |||||||| |  | |||||| |  ||||||  | ||||||||||| | ||||||||||||||||    
T  28781034 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 28781133  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgc 320  Q
      || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||    
T  28781134 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgc 28781227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 26884028 - 26884230
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | |||||||| ||||| ||||| ||||||||||| |||||||| |||| || |||||| |  ||||||  |     
T  26884028 tcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctcttacta 26884127  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||||||||||||||||||||||||||| |   | |||| | |||||   ||||| |||||||||||  | |||||||||||||| ||||| ||||| ||    
T  26884128 acaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttat 26884227  T
Q  297 tcc 299  Q
    |||    
T  26884228 tcc 26884230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 328
Target Start/End: Complemental strand, 28098691 - 28098460
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| ||||| ||||||||||||||||||||||| |||| |||||| || |  |||||||| ||||||||||||| || |||||| | ||||||||||     
T  28098691 tcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaaagctctttgtg 28098592  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||   ||| ||| ||||||||||||  | | ||| ||||  | ||| |||  ||| |||| ||| ||| | |||||||| |||||||| |||||||| ||    
T  28098591 acggaggagtccgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacacaatcccttgtcaaggccatcgaagagtccaggattttaat 28098492  T
Q  297 tcctgtcttgtctatcaattatgctgcttctt 328  Q
    ||| ||||| ||||  || |||||| ||||||    
T  28098491 tccggtcttctctaagaactatgcttcttctt 28098460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 293
Target Start/End: Original strand, 31284186 - 31284349
Alignment:
Q  130 ttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagag 229  Q
    ||||||||||| || || ||||||||||| |||||||| || |  | |||||| |  ||||||  | |||||||||||||||||||||||||||| || |    
T  31284186 ttccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtg 31284285  T
Q  230 agcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggatttt 293  Q
    | |||| | |||| |||||||| |||||||||||    || |||||||||||||||||||||||    
T  31284286 aacttcaaagaggggatgaaatcacaccatcactcgacaatgccattgaagagtctaggatttt 31284349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 327
Target Start/End: Complemental strand, 26893793 - 26893563
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||||| ||| |||||||||||||| || || ||||| | |||||||||   ||||||||| | ||||||||| |    ||| |||| ||||||||||     
T  26893793 tcttcctcctcgtatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctttgtg 26893694  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    | |  ||||| ||||||||||||||||| | ||||||||   |||| || |||||  ||||||||||| | ||||| ||||||||||||| ||| | |||    
T  26893693 atagtggaattcacaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtctatgatatacat 26893594  T
Q  297 tcctgtcttgtctatcaattatgctgcttct 327  Q
    ||| ||| | |||||||| |||||| |||||    
T  26893593 tccagtcctctctatcaactatgcttcttct 26893563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 27677836 - 27677702
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||||||||||||||||||||||||  |    || |||| | |||| |||||||| |||||||||||| | |||||||||||||||||||||||||| ||    
T  27677836 acaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttat 27677737  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    | |||| || |||||||| |||||  |||||||||    
T  27677736 tgctgtgttttctatcaactatgcctcttcttcat 27677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 320
Target Start/End: Original strand, 26646395 - 26646567
Alignment:
Q  148 agtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatg 247  Q
    |||||||||||  | |||||||||| |  |||||| |  ||||||  | |||||||||| |||||||||||||||||  | || |||    |||||||||    
T  26646395 agtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatg 26646494  T
Q  248 aaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgc 320  Q
    |||| |||||||||||  | |||||||||||||| ||||||||||| |||||||| || |||||||| |||||    
T  26646495 aaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgc 26646567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 320
Target Start/End: Original strand, 26752363 - 26752535
Alignment:
Q  148 agtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatg 247  Q
    |||||||||||  | |||||||||| |  |||||| |  ||||||  | |||||||||| |||||||||||||||||  | || |||    |||||||||    
T  26752363 agtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatg 26752462  T
Q  248 aaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgc 320  Q
    |||| |||||||||||  | |||||||||||||| ||||||||||| |||||||| || |||||||| |||||    
T  26752463 aaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgc 26752535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 302
Target Start/End: Original strand, 26622871 - 26623046
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    |||||||| ||||| ||||| ||||||||||| || ||||| |||| || |||||| |  ||||||  | ||||||||||||||||||||||||||||      
T  26622871 gtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatc 26622970  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgt 302  Q
    | || |||| | |||| || ||||| | ||||||||||   || || || ||||||||||||||||| ||||||||    
T  26622971 gtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgt 26623046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 302
Target Start/End: Original strand, 26728849 - 26729024
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    |||||||| ||||| ||||| ||||||||||| || ||||| |||| || |||||| |  ||||||  | ||||||||||||||||||||||||||||      
T  26728849 gtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatc 26728948  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgt 302  Q
    | || |||| | |||| || ||||| | ||||||||||   || || || ||||||||||||||||| ||||||||    
T  26728949 gtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgt 26729024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 329
Target Start/End: Original strand, 28139407 - 28139638
Alignment:
Q  98 cttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtca 197  Q
    |||| ||||||||||| ||||| || || || || || || || ||||| ||||||||||| |  ||||| |||| || |||||| | ||||||| || |    
T  28139407 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 28139506  T
Q  198 caagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcatt 297  Q
    |   ||||||||||| || |||||||| || ||||||| |||||| || |||||| |||| |||||  | || ||||||||||| ||||||||||||||     
T  28139507 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 28139606  T
Q  298 cctgtcttgtctatcaattatgctgcttcttc 329  Q
    ||||| || || ||||| |||||  |||||||    
T  28139607 cctgtgttttccatcaactatgcctcttcttc 28139638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 331
Target Start/End: Original strand, 26936959 - 26937193
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |  ||||||||||    ||||| ||    ||| || | ||||||||||     
T  26936959 tcttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgcttccattttattggtcatctttacaaagctctttgtg 26937058  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |    ||||| | |||||||||||||||||  ||||| |  |||||||| ||||| |||||||||||| | ||||| |||||||| ||  |||||  |||    
T  26937059 attgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccat 26937158  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
     ||||| || |||||||| |||||  |||||||||    
T  26937159 acctgtattctctatcaactatgccacttcttcat 26937193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 27229097 - 27229299
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||| ||||||||| ||  | ||||||||||||||||| || | |||||||||  | |||||||| |  | |||||| |  ||||||  |     
T  27229097 tcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactg 27229196  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||| ||||||||||||||||  || |||| | ||||||| ||||| |||||||||||  | ||||||||||| || ||| ||||||| ||    
T  27229197 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttttat 27229296  T
Q  297 tcc 299  Q
    |||    
T  27229297 tcc 27229299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 27338287 - 27338185
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||| | ||||||||||||||||  || |||  | ||||||||||||  |||||||||||| | |||||||||||||||||||||||||| ||    
T  27338287 acaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgat 27338188  T
Q  297 tcc 299  Q
    |||    
T  27338187 tcc 27338185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 27399027 - 27398925
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||| | ||||||||||||||||  || |||  | ||||||||||||  |||||||||||| | |||||||||||||||||||||||||| ||    
T  27399027 acaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgat 27398928  T
Q  297 tcc 299  Q
    |||    
T  27398927 tcc 27398925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 27706624 - 27706490
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||||||||||||||||||||||||  |    || |||| | || | |||||||| |||||||||||| | |||||||||||||||||||||||||| ||    
T  27706624 acaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttat 27706525  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||  |||||  |||||||||    
T  27706524 tcctgtgttttctatcacctatgcctcttcttcat 27706490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 299
Target Start/End: Original strand, 25579614 - 25579786
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    |||||||| ||||| ||||| |||||||||||| |   |||||| |  | ||||||||  ||||||  | |||||||||| |  |||||| ||||||| |    
T  25579614 gtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgata 25579713  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcc 299  Q
      || |||| | ||||||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||    
T  25579714 atgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcc 25579786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 331
Target Start/End: Original strand, 28149912 - 28150036
Alignment:
Q  206 tccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtctt 305  Q
    ||||||||||||||||||| |  ||||||  | |||| || ||||| ||||||||||| |  ||||||||||||||||| ||||||||||||||  ||||    
T  28149912 tccacaccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactctc-aaggccattgaagagtccaggattttcattccaatctt 28150010  T
Q  306 gtctatcaattatgctgcttcttcat 331  Q
     |||||||| ||| || |||||||||    
T  28150011 ctctatcaactatacttcttcttcat 28150036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 329
Target Start/End: Original strand, 29826005 - 29826124
Alignment:
Q  210 caccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtct 309  Q
    ||||||||||||||||| |||||||| | |||| || ||||| ||||| |||||| ||||||| ||| |||| ||||||||   ||||||| | || |||    
T  29826005 caccttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcaattcaagaatctaggatagccattcctattttctct 29826104  T
Q  310 atcaattatgctgcttcttc 329  Q
    | |||||||||| |||||||    
T  29826105 accaattatgcttcttcttc 29826124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 302
Target Start/End: Original strand, 26861481 - 26861686
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    |||||| | |||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||| |  | |||||| |  ||||||  |     
T  26861481 tcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctcttactg 26861580  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||||||||| ||||||||||| |||||  | || |||| | |||| |||||||| | |  ||||||    || ||||||||||||||||| ||||||||    
T  26861581 acaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaatgccattgaagagtctagaattttcat 26861680  T
Q  297 tcctgt 302  Q
    ||||||    
T  26861681 tcctgt 26861686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 26142872 - 26142932
Alignment:
Q  239 gaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcc 299  Q
    ||||||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||    
T  26142872 gaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcc 26142932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 26655956 - 26656056
Alignment:
Q  199 aagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattc 298  Q
    ||||||||||| || |||||||||||||  || ||||   ||||||||||||| |||||||||||  | |||||||||||||| || |||||||| ||||    
T  26655956 aagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattc 26656055  T
Q  299 c 299  Q
    |    
T  26656056 c 26656056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 26761927 - 26762027
Alignment:
Q  199 aagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattc 298  Q
    ||||||||||| || |||||||||||||  || ||||   ||||||||||||| |||||||||||  | |||||||||||||| || |||||||| ||||    
T  26761927 aagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattc 26762026  T
Q  299 c 299  Q
    |    
T  26762027 c 26762027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 27531465 - 27531317
Alignment:
Q  151 gacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaa 250  Q
    ||||||||| | |||||||| | || |||||| |  ||||||  | ||||||||||| | ||||||||||||||||  || |||| | ||||||||||||    
T  27531465 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttcaaagaggagatgaaa 27531366  T
Q  251 taacaccatcacttttgaaggccattgaagagtctaggattttcattcc 299  Q
    | |||||||||||    || ||||||||| | ||||||||||| |||||    
T  27531365 tcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcc 27531317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 25071542 - 25071661
Alignment:
Q  115 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacacct 214  Q
    |||| ||||||||||||| ||||||| || ||||  |||||||| |  |||||||| |  | ||| |||| |||||||| | |||| |||||||||||||    
T  25071542 ttcatctatgacgtgttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacct 25071641  T
Q  215 tcattgatgacagagagctt 234  Q
    | |||||||||| |||||||    
T  25071642 ttattgatgacaaagagctt 25071661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 25481707 - 25481802
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattt 292  Q
    |||||||||| |  || ||||||||||| |  || |||| | ||||||||||||| |||||||||||| | |||||||||||||| ||||||||||    
T  25481707 acaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggattt 25481802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 331
Target Start/End: Original strand, 2184170 - 2184387
Alignment:
Q  114 attcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacacc 213  Q
    |||||||||| |||||||||| ||||| |||||   |||||||||| |||||||||| |  | ||| ||    ||||| ||| | |  ||| |||||||     
T  2184170 attcacctataacgtgttcctaagtttcagaggagctgacactcgccatggttttaccggcaatctttacgatgctctatgtaaaagtggagtccacact 2184269  T
Q  214 ttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatca 313  Q
    ||||  ||||||   ||||||| | |||| | |||||||||| |||||||| |||| |||||||||||||| || |||||||| ||||| || || |  |    
T  2184270 ttcaaggatgacgaggagcttcaacgagggggtgaaataacagcatcacttatgaaagccattgaagagtccagaattttcatccctgttttctcaaaga 2184369  T
Q  314 attatgctgcttcttcat 331  Q
    | |||||| |||||||||    
T  2184370 actatgcttcttcttcat 2184387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 2184872 - 2184968
Alignment:
Q  206 tccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgt 302  Q
    ||||||| ||||| ||||||  |||||||| | |||| | ||||||||||||||| ||| |||| ||||||||||| || || |||||||| |||||    
T  2184872 tccacactttcatggatgacgaagagcttcaacgagggggtgaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgt 2184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 27214300 - 27214420
Alignment:
Q  115 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacacct 214  Q
    |||| ||||||||||||| ||||||| || ||||  ||||||||  | ||||| || |  | |||||||| |||||||||| |||| |||||||  ||||    
T  27214300 ttcagctatgacgtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaacct 27214399  T
Q  215 tcattgatgacagagagcttc 235  Q
    ||||||||||||  |||||||    
T  27214400 tcattgatgacaaggagcttc 27214420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 27234928 - 27234808
Alignment:
Q  115 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacacct 214  Q
    |||| ||||||||||||| ||||||| || ||||  ||||||||  | ||||| || |  | |||||||| |||||||||| |||| |||||||  ||||    
T  27234928 ttcagctatgacgtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaacct 27234829  T
Q  215 tcattgatgacagagagcttc 235  Q
    ||||||||||||  |||||||    
T  27234828 tcattgatgacaaggagcttc 27234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 25538547 - 25538607
Alignment:
Q  239 gaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcc 299  Q
    ||||||||||||| |||||||||||| | |||||||| ||||| ||||| ||||| |||||    
T  25538547 gaggagatgaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcc 25538607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 26811392 - 26811512
Alignment:
Q  115 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacacct 214  Q
    |||| ||||||||||||| ||||||| || ||||  |||||||| | ||| || || |    |||||||| |||||||||| |||| |||||||  ||||    
T  26811392 ttcatctatgacgtgttcattagtttcaggggtatcgacactcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaacct 26811491  T
Q  215 tcattgatgacagagagcttc 235  Q
    ||||||||||||  |||||||    
T  26811492 tcattgatgacaaggagcttc 26811512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 26959111 - 26959167
Alignment:
Q  178 ctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagctt 234  Q
    ||||||| |||||||| | |||| |||||| |||||||||||||||||| |||||||    
T  26959111 ctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagctt 26959167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 26055891 - 26055993
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||  | || ||||||||||| |  || |||| | ||||||||||||| ||| |||||||| | |||||||| ||||| ||| ||||||| ||    
T  26055891 acaagggaattaatactttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttat 26055990  T
Q  297 tcc 299  Q
    |||    
T  26055991 tcc 26055993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 26075861 - 26075963
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||  | || ||||||||||| |  || |||| | ||||||||||||| ||| |||||||| | |||||||| ||||| ||| ||||||| ||    
T  26075861 acaagggaattaatactttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttat 26075960  T
Q  297 tcc 299  Q
    |||    
T  26075961 tcc 26075963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 28149593 - 28149627
Alignment:
Q  150 tgacactcgctatggttttactgaaactctctata 184  Q
    |||||||||||||||||||||||||| ||||||||    
T  28149593 tgacactcgctatggttttactgaaaatctctata 28149627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 26635636 - 26635749
Alignment:
Q  178 ctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattg 277  Q
    ||||||| |||||||| | |||| |||||| ||||||||||||||||||  ||||||  |  ||| |||||||| ||||| || ||  | |||  |||||    
T  26635636 ctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattg 26635735  T
Q  278 aagagtctaggatt 291  Q
    ||||||| ||||||    
T  26635736 aagagtcgaggatt 26635749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 26741602 - 26741715
Alignment:
Q  178 ctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattg 277  Q
    ||||||| |||||||| | |||| |||||| ||||||||||||||||||  ||||||  |  ||| |||||||| ||||| || ||  | |||  |||||    
T  26741602 ctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattg 26741701  T
Q  278 aagagtctaggatt 291  Q
    ||||||| ||||||    
T  26741702 aagagtcgaggatt 26741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 27665358 - 27665301
Alignment:
Q  178 ctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttc 235  Q
    |||||||  ||||||| | |||| |||||||||||||||||||||||||  |||||||    
T  27665358 ctctataaggctctttctgacaaaggaatccacaccttcattgatgacaaggagcttc 27665301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 26617271 - 26617351
Alignment:
Q  177 tctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacacc 257  Q
    |||||||| |||||||||| |||| ||| |||  ||||||||||||||||  |||||||   |||| |||||||| |||||    
T  26617271 tctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26617351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 26723199 - 26723279
Alignment:
Q  177 tctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacacc 257  Q
    |||||||| |||||||||| |||| ||| |||  ||||||||||||||||  |||||||   |||| |||||||| |||||    
T  26723199 tctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26723279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 26823879 - 26823939
Alignment:
Q  271 gccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    ||||||||||||||||||||||| |||||||| || |||  ||| |||||  |||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcat 26823939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 26949521 - 26949653
Alignment:
Q  92 cctcttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctct 191  Q
    ||||| ||||||| || ||||  |||| || ||| |||||| ||||||| |||||||  |||||||| |  ||||| || |  | |||||||| ||||||    
T  26949521 cctctacttccttttcttatgatttcaactttgatgtgttcattagtttcagaggtaccgacactcgattcggtttcaccggtaatctctataaagctct 26949620  T
Q  192 ttgtcacaagggaatccacaccttcattgatga 224  Q
     | | ||||||||||||  ||||||||||||||    
T  26949621 ctctgacaagggaatccgaaccttcattgatga 26949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 331
Target Start/End: Complemental strand, 58666 - 58370
Alignment:
Q  35 ttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatggattcacctatgacgtgttcct 134  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||||| ||||  |||| ||||||||||||||||||||||||||| ||||||||||    
T  58666 ttcttacttcctttttattctctactgtcatggctatgcttcaatcatccatctcttcctcctcttccttctcctatggattcacctatcacgtgttcct 58567  T
Q  135 tagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgacagagagctt 234  Q
    ||| ||||||||| |||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||  |||||||| |||||||||||||||    
T  58566 tagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtgacaagggaatccgaaccttcatggatgacagagagctt 58467  T
Q  235 cgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    | |||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  58466 caaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 58370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 327
Target Start/End: Original strand, 3279555 - 3279783
Alignment:
Q  99 ttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcac 198  Q
    ||||||||| |||||||||||||||||||| ||| | |||||||| || | ||||||||||||||||||||||| || ||||||||||||| |  || ||    
T  3279555 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctatagagctttaagtgac 3279654  T
Q  199 aagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattc 298  Q
       ||| ||  ||||||||||||||| || |||||||  ||||| |||||||| |||| ||||||| | |||||||| |||||||| | |||||| ||||    
T  3279655 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 3279754  T
Q  299 ctgtcttgtctatcaattatgctgcttct 327  Q
    | ||||| |||||||| |||||| |||||    
T  3279755 cggtcttctctatcaactatgcttcttct 3279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 97 - 314
Target Start/End: Complemental strand, 3744 - 3527
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | ||||||||||||||||| || | |||||||||  | |||||||| | || |||||| |  ||||||  |     
T  3744 tcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactg 3645  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || ||||||||||| ||    
T  3644 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttat 3545  T
Q  297 tcctgtcttgtctatcaa 314  Q
    |||||| || ||||||||    
T  3544 tcctgtgttttctatcaa 3527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 320
Target Start/End: Complemental strand, 14668 - 14454
Alignment:
Q  106 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaa 205  Q
    |||||||||||||| ||  | |||||| | |||||||| || | |||||||||  | |||||||| | || |||||| |  ||||||  | |||||||||    
T  14668 tcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaa 14569  T
Q  206 tccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtctt 305  Q
    |||| ||||||||||||||||  || |||| | ||||||||||||| |||||||||||  | ||||||||||| || ||||||||||| |||||||| ||    
T  14568 tccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgtt 14469  T
Q  306 gtctatcaattatgc 320  Q
     |||||||| |||||    
T  14468 ttctatcaactatgc 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 297
Target Start/End: Complemental strand, 5091276 - 5091076
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| |||||||| ||||| ||||| ||||| || |||||||||||||| |  |||||||| || |||||||||| || |||||||  ||||||  ||     
T  5091276 tcttctttctcctacggatttacctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtg 5091177  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
     ||||||||| ||||||||||||||||||||||||||||   |||||||  |||||||||| |||||| | ||||||||| |||| |||| |||| ||||    
T  5091176 tcaagggaattcacaccttcattgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcat 5091077  T
Q  297 t 297  Q
    |    
T  5091076 t 5091076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 331
Target Start/End: Complemental strand, 18731813 - 18731579
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||| ||||||| ||  | |||||||| || || || || |||||||||||  | ||||||||||    |||||| |||||||||  |     
T  18731813 tcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctcttactg 18731714  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||| | || || | | |||| |||||||| | |||||||||    || |||||||||||||||||||| |||||    
T  18731713 acaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 18731614  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  18731613 tcctgtgttttctatcaactatgcctcttcttcat 18731579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 18724294 - 18724160
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||| | || || | | |||| |||||||| | |||||||||    || |||||||||||||||||||| |||||    
T  18724294 acaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 18724195  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  18724194 tcctgtgttttctatcaactatgcctcttcttcat 18724160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 331
Target Start/End: Complemental strand, 18655786 - 18655552
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||| ||||||| ||  | |||||||| || || || || |||||||||||  | ||||||||||    |||||| | |||||||  |     
T  18655786 tcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttactg 18655687  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||| | ||||| | | | || |||||||| | |||||||||    || |||||| ||||||||||||| || ||    
T  18655686 acaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctttat 18655587  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  18655586 tcctgtgttttctatcaactatgcctcttcttcat 18655552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 18679776 - 18679642
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    |||| |||||||||||||||||||||||| | || || | | |||| |||||||| | |||||||||    || |||||||||||||||||||| |||||    
T  18679776 acaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 18679677  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  18679676 tcctgtgttttctatcaactatgcctcttcttcat 18679642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 18699609 - 18699475
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||| | || || | | | || |||||||| | |||||||||    || |||||||||||||||||||| |||||    
T  18699609 acaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 18699510  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  18699509 tcctgtgttttctatcaactatgcctcttcttcat 18699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 291
Target Start/End: Original strand, 31903728 - 31903910
Alignment:
Q  109 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatcc 208  Q
    |||||||||||||| || |||||||| || ||||||||    |||||||||||||||||||||| || |||||| | |||||||| | | ||||||||||    
T  31903728 tatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatcc 31903827  T
Q  209 acaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggatt 291  Q
    ||||||| ||||| ||   ||| |||| | ||||| ||||||| ||||||||||||||  |||| ||||||||||||||||||    
T  31903828 acacctttattgacgatgaagaacttcaaagaggacatgaaatcacaccatcacttttagaggcaattgaagagtctaggatt 31903910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 29273992 - 29273858
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||  | || |||| | |||| |||||||| | | |||||||    || | ||||||||||||||| ||||| ||    
T  29273992 acaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactcgacaatgtcattgaagagtctagaatttttat 29273893  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  29273892 tcctgtgttttctatcaactatgcctcttcttcat 29273858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 127 - 314
Target Start/End: Complemental strand, 209 - 22
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    ||||||||||||||||| || | |||||||||| | |||||||| |  | |||||| |  ||||||  | ||||||||||| | ||||||||||||||||    
T  209 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 110  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaa 314  Q
      || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| |||||||| || ||||||||    
T  109 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaa 22  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 127 - 314
Target Start/End: Original strand, 7420 - 7607
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    ||||||||||||||||| || | |||||||||| | |||||||| |  | |||||| |  ||||||  | ||||||||||| | ||||||||||||||||    
T  7420 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 7519  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaa 314  Q
      || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| |||||||| || ||||||||    
T  7520 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaa 7607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 312
Target Start/End: Complemental strand, 4993 - 4778
Alignment:
Q  97 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtc 196  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||| | || |||||| |  ||||||  |     
T  4993 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactg 4894  T
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||| | ||||||||||||||||  || |||| | ||||||||||||| |||||||| ||    ||||||||||| || ||||||||||| ||    
T  4893 acaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttttat 4794  T
Q  297 tcctgtcttgtctatc 312  Q
    |||||| || ||||||    
T  4793 tcctgtgttttctatc 4778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 314
Target Start/End: Complemental strand, 13924 - 13737
Alignment:
Q  127 gtgttccttagttttagaggtagtgacactcgctatggttttactgaaactctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 226  Q
    |||||||| |||||||| || | |||||||||| | |||||||| |  | |||||| |  ||||||  | ||||||||||| | ||||||||||||||||    
T  13924 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 13825  T
Q  227 gagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaa 314  Q
      || |||| | ||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||| |||||||| || ||||||||    
T  13824 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaa 13737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 268566 - 268432
Alignment:
Q  197 acaagggaatccacaccttcattgatgacagagagcttcgaggaggagatgaaataacaccatcacttttgaaggccattgaagagtctaggattttcat 296  Q
    ||||||||||||||||||||||||||||  | || |||| | |||| |||||||| | |||||||||    || ||||||||||||||||||||||| ||    
T  268566 acaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatttttat 268467  T
Q  297 tcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||||| || |||||||| |||||  |||||||||    
T  268466 tcctgtgttttctatcaactatgcctcttcttcat 268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 28127837 - 28127754
Alignment:
Q  248 aaataacaccatcacttttgaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgctgcttcttcat 331  Q
    |||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||||| || |||| ||| |||||  |||||||||    
T  28127837 aaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcat 28127754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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