View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20234_low_6 (Length: 283)

Name: NF20234_low_6
Description: NF20234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20234_low_6
NF20234_low_6
[»] chr8 (7 HSPs)
chr8 (100-283)||(3658166-3658344)
chr8 (182-226)||(13397621-13397665)
chr8 (182-226)||(13403176-13403220)
chr8 (182-225)||(29447044-29447087)
chr8 (182-225)||(36450699-36450742)
chr8 (182-225)||(44067598-44067641)
chr8 (188-226)||(31557066-31557104)
[»] chr1 (10 HSPs)
chr1 (182-283)||(40747712-40747813)
chr1 (182-225)||(1704940-1704983)
chr1 (182-225)||(16297226-16297269)
chr1 (182-223)||(21365997-21366038)
chr1 (182-223)||(22515832-22515873)
chr1 (189-225)||(6612112-6612148)
chr1 (182-225)||(40258878-40258921)
chr1 (182-225)||(42359394-42359437)
chr1 (182-212)||(48415671-48415701)
chr1 (182-223)||(51410098-51410139)
[»] chr3 (15 HSPs)
chr3 (183-282)||(12704597-12704696)
chr3 (182-225)||(1389909-1389952)
chr3 (182-225)||(55401146-55401189)
chr3 (184-225)||(15999957-15999998)
chr3 (182-226)||(8789493-8789537)
chr3 (182-225)||(24204986-24205029)
chr3 (182-225)||(25775578-25775621)
chr3 (182-225)||(34185057-34185100)
chr3 (184-226)||(3631754-3631796)
chr3 (246-283)||(25892479-25892516)
chr3 (177-225)||(4987220-4987268)
chr3 (194-226)||(8412904-8412936)
chr3 (182-226)||(20503535-20503579)
chr3 (234-282)||(25326446-25326494)
chr3 (182-226)||(40993280-40993324)
[»] chr4 (16 HSPs)
chr4 (179-225)||(30838292-30838338)
chr4 (182-230)||(20633537-20633585)
chr4 (182-283)||(18513180-18513281)
chr4 (182-226)||(11931361-11931405)
chr4 (182-226)||(16073464-16073508)
chr4 (182-225)||(3947706-3947749)
chr4 (182-225)||(17876237-17876280)
chr4 (182-225)||(22440562-22440605)
chr4 (182-225)||(23292931-23292974)
chr4 (182-225)||(30982812-30982855)
chr4 (182-225)||(40965342-40965385)
chr4 (246-283)||(19230312-19230349)
chr4 (188-225)||(32910634-32910671)
chr4 (182-226)||(715550-715594)
chr4 (182-226)||(752876-752920)
chr4 (182-226)||(3064873-3064917)
[»] chr7 (13 HSPs)
chr7 (182-225)||(9778576-9778619)
chr7 (182-236)||(28155614-28155668)
chr7 (182-226)||(21880222-21880266)
chr7 (181-225)||(43250075-43250119)
chr7 (182-225)||(1433530-1433573)
chr7 (182-225)||(5409776-5409819)
chr7 (182-221)||(8842284-8842323)
chr7 (182-225)||(29763134-29763177)
chr7 (182-227)||(5307325-5307370)
chr7 (185-226)||(33994282-33994323)
chr7 (182-230)||(6490782-6490830)
chr7 (182-226)||(7438787-7438831)
chr7 (182-226)||(40287307-40287351)
[»] chr5 (6 HSPs)
chr5 (182-225)||(2436982-2437025)
chr5 (234-283)||(26205751-26205800)
chr5 (182-223)||(39698625-39698666)
chr5 (246-283)||(25863223-25863260)
chr5 (234-283)||(43554540-43554589)
chr5 (185-225)||(17088362-17088402)
[»] chr6 (13 HSPs)
chr6 (182-283)||(8389413-8389512)
chr6 (247-283)||(6299531-6299567)
chr6 (247-283)||(6306341-6306377)
chr6 (182-230)||(7938166-7938214)
chr6 (182-226)||(32978844-32978888)
chr6 (182-225)||(8776913-8776956)
chr6 (182-225)||(17841534-17841577)
chr6 (186-225)||(21395262-21395301)
chr6 (182-225)||(31385001-31385044)
chr6 (182-212)||(10649372-10649402)
chr6 (234-283)||(17168454-17168503)
chr6 (182-226)||(4878013-4878056)
chr6 (182-226)||(13360318-13360362)
[»] chr2 (8 HSPs)
chr2 (182-226)||(2438664-2438708)
chr2 (182-225)||(37419825-37419868)
chr2 (182-212)||(18255949-18255979)
chr2 (246-283)||(25544500-25544537)
chr2 (182-226)||(18840958-18841002)
chr2 (181-225)||(23058388-23058432)
chr2 (170-226)||(36756266-36756322)
chr2 (182-230)||(42832237-42832285)
[»] scaffold0361 (1 HSPs)
scaffold0361 (182-225)||(14598-14641)
[»] scaffold0009 (1 HSPs)
scaffold0009 (184-223)||(188473-188512)
[»] scaffold0007 (1 HSPs)
scaffold0007 (238-283)||(225263-225308)
[»] scaffold0793 (1 HSPs)
scaffold0793 (182-226)||(4826-4870)
[»] scaffold0136 (1 HSPs)
scaffold0136 (182-226)||(3783-3827)
[»] scaffold0008 (1 HSPs)
scaffold0008 (185-217)||(263309-263341)
[»] scaffold0004 (1 HSPs)
scaffold0004 (182-226)||(92892-92936)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 283
Target Start/End: Complemental strand, 3658344 - 3658166
Alignment:
Q  100 tttagaccaagttgtgtgttaaatttagttatttgcatgtaaataattgttctgattttcattttacttgtaaagattaattaagcacggacactccttg 199  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    || |||||||||||||||| |    
T  3658344 tttacaccaagttgtgtgttaaatttagttatttgcatgtaaataattgttctgattttcattttacttg--aagt---atgaagcacggacactcctcg 3658250  T
Q  200 gattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattttc 283  Q
     ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||| || || ||||||    
T  3658249 aattaggcgtgtcttgatgtcggacatcgacgcgtgtccgacatcaacacgacacctatgattacactgaactacattattttc 3658166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 13397665 - 13397621
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
T  13397665 aagcacggacactccttgaattaggcgtgtctcggtgtcggacat 13397621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 13403220 - 13403176
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  13403220 aagcacggacactccttgaattaagcgtgtctcggtgtcggacat 13403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 29447044 - 29447087
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||    
T  29447044 aagcacggacactcctaggattaggcgtgtcctggtgtcagaca 29447087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 36450699 - 36450742
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||    
T  36450699 aagcacagacactcctcggattaggcgtgtcctggtgtcggaca 36450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 44067641 - 44067598
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| | |||||||||||| ||||||||||||    
T  44067641 aagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 44067598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 31557104 - 31557066
Alignment:
Q  188 ggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  31557104 ggacacaccttggattaggcgtgtcctggtgtcggacat 31557066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 40747712 - 40747813
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 281  Q
    |||||||||| ||||| |||||||| |||||   |||| |||||| ||    ||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  40747712 aagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgtcattt 40747811  T
Q  282 tc 283  Q
    ||    
T  40747812 tc 40747813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 1704940 - 1704983
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  1704940 aagcatggacactccttggattaggcgtgtctcggtgtcggaca 1704983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 16297226 - 16297269
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  16297226 aagcacggacactcctcggattaggcgtgtcctggtgtcggaca 16297269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 21365997 - 21366038
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcgga 223  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  21365997 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 21366038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 22515832 - 22515873
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcgga 223  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  22515832 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 22515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 6612112 - 6612148
Alignment:
Q  189 gacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6612112 gacactccttggattaggcgtgtcctggtgtcggaca 6612148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 40258878 - 40258921
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||    
T  40258878 aagcatggacactcctcggattaggcgtgtcctggtgtcggaca 40258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 42359394 - 42359437
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  42359394 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 42359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 48415671 - 48415701
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtc 212  Q
    |||||||||||||||||||||||||||||||    
T  48415671 aagcacggacactccttggattaggcgtgtc 48415701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 51410139 - 51410098
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcgga 223  Q
    ||||||| | |||||||||||||||||||||| |||||||||    
T  51410139 aagcacgaatactccttggattaggcgtgtctcggtgtcgga 51410098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 282
Target Start/End: Original strand, 12704597 - 12704696
Alignment:
Q  183 agcacggacactccttggattaggcgtgtcttggtgtcggacat-cgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 281  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||| ||  | | |||||||| | ||||||||||||| ||||||||||||||| ||||||    
T  12704597 agcacggacactcctaggattagacgtgttctggtgtcggacatgcgttggt-gtccgacaccgacacgacacctatgattacattgaattatgtcattt 12704695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 1389952 - 1389909
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  1389952 aagcacggacactccttggattaggcatgtcctggtgtcggaca 1389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 55401189 - 55401146
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  55401189 aagcacggacactcctcggattaggcgtgtctcggtgtcggaca 55401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 15999957 - 15999998
Alignment:
Q  184 gcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  15999957 gcacggacactccttggattaggcgtgtcccggtgtcggaca 15999998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 8789493 - 8789537
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||    
T  8789493 aagcacggacactcctcggattaggcgtgtctcggtgtccgacat 8789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 24204986 - 24205029
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| | |||||||||||| ||||||||||||    
T  24204986 aagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 24205029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 25775621 - 25775578
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  25775621 aagcacgaacactcctcggattaggcgtgtcctggtgtcggaca 25775578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 34185057 - 34185100
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  34185057 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 34185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3631796 - 3631754
Alignment:
Q  184 gcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||| ||| |||||||||| |||||||||||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacat 3631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 25892516 - 25892479
Alignment:
Q  246 acacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  25892516 acacgacacctatgattacactgaattatatcattttc 25892479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 4987220 - 4987268
Alignment:
Q  177 taattaagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||| ||| |||||||||||| ||||||||||||||  |||||||||||    
T  4987220 taatgaagtacggacactcctcggattaggcgtgtcccggtgtcggaca 4987268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 8412904 - 8412936
Alignment:
Q  194 tccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||| ||||||||||||||||||    
T  8412904 tccttggattaggcatgtcttggtgtcggacat 8412936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 20503579 - 20503535
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||  |||||| |||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccggtgtcagacat 20503535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 25326494 - 25326446
Alignment:
Q  234 tgtccgacatcaacacgacacctataattacattgaattatatcatttt 282  Q
    ||||||||| |||||||||| ||||||||||| | |||||||| |||||    
T  25326494 tgtccgacaccaacacgacatctataattacactaaattatattatttt 25326446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 40993280 - 40993324
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  40993280 aagcatggacactcctcggattaggcgtgtcccggtgtcggacat 40993324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 30838338 - 30838292
Alignment:
Q  179 attaagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  30838338 attaagcacggacactcctcgggttaggcgtgtcttggtgtcggaca 30838292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 20633585 - 20633537
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 230  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  20633585 aagcacgaacactccttggattaggcgtgtcttggtgtccgacaccgac 20633537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 18513180 - 18513281
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca-tcgacgcttgtccgacatcaacac-gacacctataattacattgaattatatcat 279  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||  || ||  ||||||||| |||||| ||||| ||| ||||||||||||||| ||||    
T  18513180 aagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcg-gtgtccgaca-caacactgacacatatgattacattgaattatgtcat 18513277  T
Q  280 tttc 283  Q
    ||||    
T  18513278 tttc 18513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 11931405 - 11931361
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||    
T  11931405 aagcacggacactccatggattaggtgtgtcctggtgtcggacat 11931361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 16073508 - 16073464
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||    
T  16073508 aagcatggacactcctcggattaggcgtgtcttagtgtcggacat 16073464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3947706 - 3947749
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  3947706 aagcacggacactcctcggattaggtgtgtcctggtgtcggaca 3947749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 17876280 - 17876237
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||    
T  17876280 aagcacagacactccttggattaggtgtgtcctggtgtcggaca 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 22440562 - 22440605
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||||||||| | ||||||||||    
T  22440562 aagcacggacactcctcggattaggcgtgtcctagtgtcggaca 22440605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 23292931 - 23292974
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  23292931 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 23292974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 30982812 - 30982855
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||| ||||||||||||||||  |||||||||||    
T  30982812 aagcacggacactctttggattaggcgtgtcccggtgtcggaca 30982855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 40965385 - 40965342
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||| |||||||||  ||||||||||||||||||||||||||    
T  40965385 aagcaccgacactcctcagattaggcgtgtcttggtgtcggaca 40965342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 19230312 - 19230349
Alignment:
Q  246 acacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  19230312 acacgacacctataattacattgaattatgttattttc 19230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 32910671 - 32910634
Alignment:
Q  188 ggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  32910671 ggacactcctcggattaggcgtgtcatggtgtcggaca 32910634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 715550 - 715594
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 715594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 752876 - 752920
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 752920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 3064873 - 3064917
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| |||||||||||||||  | |||||||||    
T  3064873 aagcacggacactcctcggattaggcgtgtctcagagtcggacat 3064917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 9778619 - 9778576
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggaca 9778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 28155668 - 28155614
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgt 236  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||| |||| |||||    
T  28155668 aagcacggacattccttggattaggcgtgtcctggtgtccgacaccgacacttgt 28155614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 21880266 - 21880222
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    ||||||||||||| || |||||||||||||| |||||||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacat 21880222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 43250119 - 43250075
Alignment:
Q  181 taagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||    
T  43250119 taagcacggacactcctcgaattaggcgtgtcctggtgtcggaca 43250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 1433573 - 1433530
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||    
T  1433573 aagcacggacactcctcggattagacgtgtcctggtgtcggaca 1433530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 5409776 - 5409819
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 5409819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 8842284 - 8842323
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcg 221  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  8842284 aagcacggacactccttggattaggcgtgtcccggtgtcg 8842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 29763134 - 29763177
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  29763134 aagcacggacactcctcggattaggcgtgtcctgatgtcggaca 29763177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 5307370 - 5307325
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatc 227  Q
    ||||||| ||||||||||||||||||||||| | |||||| |||||    
T  5307370 aagcacgtacactccttggattaggcgtgtcctagtgtcgcacatc 5307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 33994323 - 33994282
Alignment:
Q  185 cacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||| |||||||||||||||||||||||| ||||| ||||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacat 33994282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 6490830 - 6490782
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 230  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||    
T  6490830 aagcacggacactcctcggattaagcgtgtcccggtgtcggacaccgac 6490782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 7438831 - 7438787
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||||| |||||||||||| | |||||| ||||    
T  7438831 aagcacggacactccttgaattaggcgtgtcctagtgtcgcacat 7438787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 40287307 - 40287351
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||    
T  40287307 aagcacggacactcctcggattaggcatgtcccggtgtcggacat 40287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 2437025 - 2436982
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  2437025 aagcacgaacactcctcggattaggcgtgtcttggtgtcggaca 2436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 26205751 - 26205800
Alignment:
Q  234 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||| ||||||||||||||| |||||| |||||||| ||||||||    
T  26205751 tgtccgacaccaacacgacacctatgattacactgaattatgtcattttc 26205800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 39698666 - 39698625
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcgga 223  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  39698666 aagcacggacactcctcggattaggcgtgtctcggtgtcgga 39698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 25863260 - 25863223
Alignment:
Q  246 acacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  25863260 acacgacacttataattacactgaattatatcattttc 25863223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 43554589 - 43554540
Alignment:
Q  234 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||| | ||||||||||||| |||||| | |||||||||||||||    
T  43554589 tgtccgacaccgacacgacacctatgattacactaaattatatcattttc 43554540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 17088402 - 17088362
Alignment:
Q  185 cacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||||||||| ||||||||||||||  |||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggaca 17088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 8389413 - 8389512
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgacgcttgtccgacatcaacacgacacctataattacattgaattatatcattt 281  Q
    |||||||||||||||| |||||||| |||||  ||||||||||| ||  | | |||||||| | ||| |||| ||||||||||| |||||||||| ||||    
T  8389413 aagcacggacactcctcggattaggtgtgtcccggtgtcggacaccg-tgttggtccgacaccgacatgaca-ctataattacactgaattatatgattt 8389510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 6299567 - 6299531
Alignment:
Q  247 cacgacacctataattacattgaattatatcattttc 283  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttc 6299531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 6306377 - 6306341
Alignment:
Q  247 cacgacacctataattacattgaattatatcattttc 283  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttc 6306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 7938214 - 7938166
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 230  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  7938214 aagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgac 7938166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 32978844 - 32978888
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacat 32978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 8776913 - 8776956
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggaca 8776956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 17841534 - 17841577
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| |||||||||||||||  ||||||||||    
T  17841534 aagcacggacactcctcggattaggcgtgtctcagtgtcggaca 17841577  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 21395262 - 21395301
Alignment:
Q  186 acggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  21395262 acggacactccttggattaggcgtgtcctggtgtccgaca 21395301  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 31385044 - 31385001
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||||||||||||||||||  ||||| |||||    
T  31385044 aagcacggacactccttggattaggcgtgtcccggtgtaggaca 31385001  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 10649402 - 10649372
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtc 212  Q
    |||||||||||||||||||||||||||||||    
T  10649402 aagcacggacactccttggattaggcgtgtc 10649372  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 17168454 - 17168503
Alignment:
Q  234 tgtccgacatcaacacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||| | ||||||||||||| |||||| | |||||||||||||||    
T  17168454 tgtccgacaccgacacgacacctattattacactaaattatatcattttc 17168503  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 4878056 - 4878013
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  4878056 aagcacggacactcctcggattaggcgtgtcct-gtgtcggacat 4878013  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 13360318 - 13360362
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||| | |||||||||||||||  |||||||||||    
T  13360318 aagcacggacactcttcggattaggcgtgtctcagtgtcggacat 13360362  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 2438664 - 2438708
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacat 2438708  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 37419868 - 37419825
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccggtgtcggaca 37419825  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 18255949 - 18255979
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtc 212  Q
    |||||||||||||||||||||||||||||||    
T  18255949 aagcacggacactccttggattaggcgtgtc 18255979  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 25544537 - 25544500
Alignment:
Q  246 acacgacacctataattacattgaattatatcattttc 283  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  25544537 acacgacacctatgattacactgaattatatcattttc 25544500  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 18840958 - 18841002
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| |||||||| |||||  ||||||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccggtgtcggacat 18841002  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 23058388 - 23058432
Alignment:
Q  181 taagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    |||||||||||||| || ||||||||||||||  |||||||||||    
T  23058388 taagcacggacacttctcggattaggcgtgtcccggtgtcggaca 23058432  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 36756266 - 36756322
Alignment:
Q  170 taaagattaattaagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||| |||||| |||||| ||||||||| |||||||||||||   ||||||||||||    
T  36756266 taaatattaatgaagcacagacactcctaggattaggcgtgttgcggtgtcggacat 36756322  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 42832237 - 42832285
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacatcgac 230  Q
    ||||| |||||||||||||||||||||||||  || |||||||| ||||    
T  42832237 aagcaaggacactccttggattaggcgtgtcccggagtcggacaccgac 42832285  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 14641 - 14598
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggaca 225  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||    
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggaca 14598  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 188512 - 188473
Alignment:
Q  184 gcacggacactccttggattaggcgtgtcttggtgtcgga 223  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcctggtgtcgga 188473  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 225263 - 225308
Alignment:
Q  238 cgacatcaacacgacacctataattacattgaattatatcattttc 283  Q
    ||||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttc 225308  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 4826 - 4870
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||   |||||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacat 4870  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 3783 - 3827
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    ||||| |||||||||| ||||||||||||||| | ||||||||||    
T  3783 aagcaaggacactcctcggattaggcgtgtctcgatgtcggacat 3827  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 263309 - 263341
Alignment:
Q  185 cacggacactccttggattaggcgtgtcttggt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  263309 cacggacactcctcggattaggcgtgtcttggt 263341  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 92936 - 92892
Alignment:
Q  182 aagcacggacactccttggattaggcgtgtcttggtgtcggacat 226  Q
    |||||||||||||||| ||||||||||||||  |||||| |||||    
T  92936 aagcacggacactcctcggattaggcgtgtccaggtgtccgacat 92892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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