View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20235_high_1 (Length: 613)
Name: NF20235_high_1
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_1 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 12 - 613
Target Start/End: Complemental strand, 41524521 - 41523920
Alignment:
| Q |
12 |
gagatgaagaatgaattagaggaggaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagc |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41524521 |
gagaagaagaatgaattagaggaggaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagc |
41524422 |
T |
|
| Q |
112 |
tagaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaacttggggtgttgagaaaaatgattggtaaattggagca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41524421 |
tagaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataatactcaacttggtgtgttgagaaaaatgattggtaaattggagca |
41524322 |
T |
|
| Q |
212 |
tgaagtttcggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaa |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41524321 |
tgaagcttcggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggcgataaa |
41524222 |
T |
|
| Q |
312 |
aatgttttggctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41524221 |
aatgttttggctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagt |
41524122 |
T |
|
| Q |
412 |
tggctgatgagaaacgtaagattgagatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41524121 |
tggctgatgagaaacgtaagattgagatattgctcgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaa |
41524022 |
T |
|
| Q |
512 |
tcttttgaagagtgtaggtgtctctggtggtggtaatagtgaggggaagtcacctgttgatcctgtggctgctaatattgaagacagagatgaagatgat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41524021 |
tcttttgaagagtgtaggtgtctctggtggtggtaataatgaggggaagtcacctgttgatcctgtggctgctaatattgaagacagagatgaagatgat |
41523922 |
T |
|
| Q |
612 |
tt |
613 |
Q |
| |
|
|| |
|
|
| T |
41523921 |
tt |
41523920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 36 - 613
Target Start/End: Complemental strand, 41515546 - 41514969
Alignment:
| Q |
36 |
gaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttga |
135 |
Q |
| |
|
|||||||| ||||||||| | |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
41515546 |
gaagttgaaaagttgaaggagaaatgttttgatggtagcaatgaaatttatgtgttaagaagaaagaatggtgaattagagtctgaaattttggagttga |
41515447 |
T |
|
| Q |
136 |
ggaagttgaatgaaaagaggatggaggataataatgaacttggggtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatc |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41515446 |
ggaagttgaatgaaaagaggatgggggataataatgaacttggtgtattgaggaaaatgattggtaaattggagcatgaagtttcggagttgaggaaatc |
41515347 |
T |
|
| Q |
236 |
gaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggtt |
335 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
41515346 |
gaagaagaaatggttagatgatggcaatgcttttgatgcgcttagaaataaggttcgtgtattggagggtgataagaatgctttggctggggttgaggtt |
41515247 |
T |
|
| Q |
336 |
agaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattg |
435 |
Q |
| |
|
| |||||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41515246 |
aaaaatggcgaattgaaggaaatagtgaagaaatataaggaaactataagtaggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattg |
41515147 |
T |
|
| Q |
436 |
agatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtctc |
535 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
41515146 |
agatattgcttgggtctatgtacaaaaagtttaaaggactgcttggaagactttcggggttggaggatgataccaaacttttgaagagtgtaggtgcctc |
41515047 |
T |
|
| Q |
536 |
tggtggtggtaatagtgaggggaagtcacctgttgatcctgtggctgctaatattgaagacagagatgaagatgattt |
613 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41515046 |
tggtggtggtagtaatgaggggaagtcacatgttgatcctatggctgctaatattgaagacagagatgaagaggattt |
41514969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 41499752 - 41499389
Alignment:
| Q |
21 |
aatgaattagaggaggaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggcta |
120 |
Q |
| |
|
|||||| |||||| |||||| ||| |||||| | ||| ||||||||||||| ||||| ||| ||||||||||| ||||| || ||| |||| || |
|
|
| T |
41499752 |
aatgaactagaggttgaagttatgaatttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaattagaatctg |
41499653 |
T |
|
| Q |
121 |
agattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaacttggggtgttgagaaaaatgattggtaaattggagcatgaagtttc |
220 |
Q |
| |
|
| ||||||||||||||||| || |||||||||| | ||||||||||||||||||||| ||| | ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
41499652 |
aaattttggagttgaggaaattaaatgaaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagtttt |
41499553 |
T |
|
| Q |
221 |
ggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttg |
320 |
Q |
| |
|
|||| ||||||| | |||||| |||||||| ||||||||||||||| ||||| | | | | |||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
41499552 |
ggagttgaggaagttgaagaaaaaatggtttgatgatagcaatgctcatgatgaggtacgaagcaaggttcgtgtaatggagggtgataagaatgatttg |
41499453 |
T |
|
| Q |
321 |
gctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataa |
384 |
Q |
| |
|
|||||| || || || || ||| ||| |||||||||| ||||||| | |||||||||||||| |
|
|
| T |
41499452 |
gctggacttaagattgaaactggtgaattgaaggaaacaatgaagaagaatttggaaactataa |
41499389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 79 - 384
Target Start/End: Complemental strand, 41503887 - 41503582
Alignment:
| Q |
79 |
aaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaacttgg |
178 |
Q |
| |
|
||||||||||||||||||| |||| |||| | |||||| || | |||||||||||||||| || |||||||||| | ||||||||||||| ||||||| |
|
|
| T |
41503887 |
aaattgatgtgttaagaagtaagactggtaaactagagtctgaagttttggagttgaggaaattaaatgaaaagatggtggaggataataacgaacttgt |
41503788 |
T |
|
| Q |
179 |
ggtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgctt |
278 |
Q |
| |
|
||| | ||| |||||||||||||||| ||||||||||||| |||| | |||| | |||||| |||| |||||| |||||| |||| ||||| |||| |
|
|
| T |
41503787 |
tgtgctaagagaaatgattggtaaattagagcatgaagttttggagttaaggaggttgaagaaaaaattgttagaaaatagcagtgctcatgatgagctt |
41503688 |
T |
|
| Q |
279 |
aggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaa |
378 |
Q |
| |
|
| | ||||||| ||| |||||||||||||||||| |||||||| || || ||| || ||| ||| |||||||||| ||||||| | |||||||| |
|
|
| T |
41503687 |
cgaagcaaggttcatgttctggagggtgataaaaatgatttggctgaccttaagattaaaactggtgaattgaaggaaacaatgaagaagaatttggaaa |
41503588 |
T |
|
| Q |
379 |
ctataa |
384 |
Q |
| |
|
|||||| |
|
|
| T |
41503587 |
ctataa |
41503582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 41519439 - 41519327
Alignment:
| Q |
246 |
tggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcg |
345 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||| | | | |||| |||||||||||| ||| || |||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
41519439 |
tggttagatgatagtaatgctcttgatgagcttcgaagcatggttggtgtattggaggttgaaaagaatgctttggctggaattgagattaaaaatggcg |
41519340 |
T |
|
| Q |
346 |
aagtgaaggaaac |
358 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
41519339 |
aattgaaggaaac |
41519327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 243 - 420
Target Start/End: Complemental strand, 41504074 - 41503897
Alignment:
| Q |
243 |
aaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatg |
342 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| |||| | |||||| |||||||||||| ||| ||||||| |||||||| | || || || |||| |
|
|
| T |
41504074 |
aaatggtttgatgatagaaatgctcttgatgagcttcaaaggaaggttggtgtattggaggatgaaaaaaatgatttggctgaaattaagagtaaaaata |
41503975 |
T |
|
| Q |
343 |
gcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatg |
420 |
Q |
| |
|
||||| |||||| ||| |||| ||| ||||| |||||||| |||| |||||||||| || || |||||||||| |
|
|
| T |
41503974 |
gcgaattgaaggcaactgtgacgaagtatttggcaactataagcgagttgaggaaagaaaacagcaaattggctgatg |
41503897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 41503548 - 41503473
Alignment:
| Q |
433 |
ttgagatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgatac |
508 |
Q |
| |
|
|||| ||||| ||||||||| | ||||| ||||| ||||||||| ||||||| |||| || |||||||||||||| |
|
|
| T |
41503548 |
ttgatatattacttgggtctttttacaaaaagttcagaggactgactggaagagtttcaaggttggaggatgatac |
41503473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University