View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_high_16 (Length: 349)

Name: NF20235_high_16
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_high_16
NF20235_high_16
[»] chr5 (10 HSPs)
chr5 (253-349)||(27760210-27760306)
chr5 (255-349)||(13843832-13843926)
chr5 (254-349)||(1028282-1028377)
chr5 (253-347)||(17016280-17016374)
chr5 (274-349)||(18541858-18541933)
chr5 (277-343)||(22196450-22196516)
chr5 (274-348)||(33040381-33040452)
chr5 (274-349)||(33040195-33040267)
chr5 (274-322)||(83932-83980)
chr5 (254-294)||(28009987-28010027)
[»] chr4 (15 HSPs)
chr4 (253-349)||(50858147-50858243)
chr4 (253-349)||(29669551-29669647)
chr4 (254-349)||(45427126-45427221)
chr4 (253-349)||(53740001-53740097)
chr4 (253-349)||(990858-990953)
chr4 (253-349)||(51469616-51469711)
chr4 (274-343)||(52810746-52810815)
chr4 (253-345)||(15664975-15665067)
chr4 (257-344)||(18862481-18862568)
chr4 (253-349)||(43972174-43972270)
chr4 (274-329)||(46529044-46529099)
chr4 (253-294)||(990715-990756)
chr4 (253-310)||(23018328-23018385)
chr4 (255-291)||(27048556-27048592)
chr4 (274-346)||(37288759-37288831)
[»] chr3 (20 HSPs)
chr3 (259-349)||(50056974-50057064)
chr3 (253-349)||(44573461-44573557)
chr3 (253-349)||(44573774-44573870)
chr3 (274-346)||(22666438-22666510)
chr3 (253-349)||(4256054-4256149)
chr3 (275-343)||(48511535-48511602)
chr3 (274-339)||(10453823-10453888)
chr3 (274-343)||(16045266-16045335)
chr3 (253-349)||(4255645-4255740)
chr3 (253-349)||(4255872-4255967)
chr3 (274-343)||(9180282-9180351)
chr3 (253-346)||(14170188-14170281)
chr3 (274-343)||(16033194-16033263)
chr3 (274-343)||(16051429-16051498)
chr3 (274-339)||(16060779-16060844)
chr3 (277-342)||(2799940-2800005)
chr3 (253-294)||(4255744-4255785)
chr3 (274-322)||(10450546-10450594)
chr3 (285-337)||(9179054-9179106)
chr3 (251-287)||(31563878-31563914)
[»] chr2 (15 HSPs)
chr2 (251-349)||(3976874-3976972)
chr2 (255-349)||(21214076-21214170)
chr2 (257-349)||(3976663-3976754)
chr2 (255-349)||(3976346-3976440)
chr2 (274-345)||(14289059-14289130)
chr2 (272-343)||(936953-937023)
chr2 (254-349)||(17508929-17509023)
chr2 (274-343)||(10862220-10862289)
chr2 (274-343)||(15961922-15961990)
chr2 (274-329)||(10861955-10862010)
chr2 (280-346)||(28193478-28193541)
chr2 (274-322)||(15962056-15962104)
chr2 (300-343)||(32197049-32197092)
chr2 (274-315)||(32197144-32197185)
chr2 (274-322)||(11349915-11349963)
[»] chr7 (16 HSPs)
chr7 (19-137)||(11720791-11720911)
chr7 (253-349)||(40121807-40121903)
chr7 (255-349)||(30296448-30296542)
chr7 (254-349)||(41670687-41670782)
chr7 (274-343)||(37756060-37756128)
chr7 (274-343)||(36270591-36270660)
chr7 (274-342)||(47346216-47346283)
chr7 (280-349)||(11470004-11470072)
chr7 (129-240)||(11721041-11721154)
chr7 (274-349)||(43384174-43384248)
chr7 (277-329)||(36495818-36495870)
chr7 (274-321)||(11469566-11469613)
chr7 (274-349)||(11469765-11469839)
chr7 (274-349)||(14742734-14742808)
chr7 (309-348)||(36092527-36092566)
chr7 (274-342)||(24240300-24240366)
[»] chr6 (9 HSPs)
chr6 (253-349)||(8143837-8143933)
chr6 (253-349)||(21067246-21067342)
chr6 (253-349)||(21089037-21089133)
chr6 (253-349)||(19753793-19753889)
chr6 (282-349)||(28068321-28068388)
chr6 (260-322)||(22911370-22911432)
chr6 (301-349)||(13673990-13674038)
chr6 (260-312)||(22889764-22889816)
chr6 (253-349)||(32216042-32216137)
[»] chr8 (8 HSPs)
chr8 (254-349)||(21653462-21653557)
chr8 (254-349)||(21653623-21653718)
chr8 (274-343)||(8605404-8605473)
chr8 (274-347)||(39587978-39588049)
chr8 (274-343)||(38287858-38287927)
chr8 (260-349)||(3183791-3183880)
chr8 (254-288)||(34248265-34248299)
chr8 (302-346)||(9596141-9596185)
[»] chr1 (10 HSPs)
chr1 (253-349)||(20735657-20735752)
chr1 (267-349)||(19614146-19614230)
chr1 (274-343)||(29228589-29228657)
chr1 (274-329)||(45858807-45858862)
chr1 (274-339)||(30604582-30604646)
chr1 (253-313)||(8520282-8520341)
chr1 (274-342)||(4187404-4187474)
chr1 (286-342)||(27957953-27958009)
chr1 (274-322)||(17294801-17294849)
chr1 (274-322)||(17294912-17294960)
[»] scaffold0012 (1 HSPs)
scaffold0012 (274-329)||(165712-165767)
[»] scaffold0785 (1 HSPs)
scaffold0785 (274-329)||(3017-3072)
[»] scaffold0054 (1 HSPs)
scaffold0054 (260-322)||(11223-11285)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 27760306 - 27760210
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  27760306 cgcaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgatagatct 27760210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 13843926 - 13843832
Alignment:
Q  255 caattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13843926 caattaaggtggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccaacgatagatct 13843832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 1028282 - 1028377
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  1028282 gcaattaaggcggaatttccaacacaccccctcacgcttcagccctgcccaatgggtctgaagcgtggacgatgcgggaagcccaacgatagatct 1028377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 17016280 - 17016374
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagat 347  Q
    |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||  |||||  |||||| |||  ||||||||||||||||||    
T  17016280 cgcaattaaggcggaatttccaacaccccccctcacgcttcggcctggcccaatggagctgaagtgtggacaatgtgggaagcccaacgatagat 17016374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 18541933 - 18541858
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  18541933 aacaccccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccgatgatagatct 18541858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 22196450 - 22196516
Alignment:
Q  277 acaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||||||||| ||||| ||||||||||||||  ||||||||||||  ||||||||||||    
T  22196450 acaccccctcacgcttcagcctggtccaatgggcctgaagtgtggacgatgcaaaaagcccaacgat 22196516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 33040452 - 33040381
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatc 348  Q
    |||||||| |||||||||||| || |||| |||||||||||| ||||||||||||   |||||||||||| ||||    
T  33040452 aacacacctcctcacgcttcagcccggccgaatgggcctgaagcgtggacgatgc---aagcccaacgatggatc 33040381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 33040267 - 33040195
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||| || || | ||||||| |||| ||||||||||||   |||||||||||| |||||    
T  33040267 aacacaccccctcacgcttcagcccggacgaatgggcttgaagcgtggacgatgc---aagcccaacgatggatct 33040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 83932 - 83980
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||| ||||||||||||||| ||  |||||||||||||||| ||||||    
T  83932 aacaccccccctcacgcttcagcccagcccaatgggcctgaagcgtgga 83980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 28009987 - 28010027
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttca 294  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  28009987 gcaattaaggcggaatttccaacacacacccccacacttca 28010027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 50858243 - 50858147
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50858243 cgcaattaaggcggaatttccaacacacctcctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccaacgatagatct 50858147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 29669551 - 29669647
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  29669551 cgcaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaatagatct 29669647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 45427126 - 45427221
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  45427126 gcaattaaggcggaatttccaacacaccccctcatgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgatagatct 45427221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 53740097 - 53740001
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  53740097 cgcaattaaggcggaatttccaacacctcccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccagcgatagatct 53740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 990953 - 990858
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||| |||||| |||||||||||||    
T  990953 cgcaattaaggcg-aatttccaacacaccccctcacgcttcagcccggcctaatgggcctgaagcgtggacgatgcgggaagctcaacgatagatct 990858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 51469711 - 51469616
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||| |||| |||||||||||||||    
T  51469711 cgcaataaaggcggaatttccaacacaccccctcacgcttcagcccggcccaat-ggcctgaagcgtggacgatgcgggaaacccaacgatagatct 51469616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 52810746 - 52810815
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||||||||  ||||||||||||||    
T  52810746 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtcggaagcccaacgat 52810815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 15665067 - 15664975
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatag 345  Q
    |||||||||||||||||||||||||| | ||||||||||| | || |  |||||||| ||||| |||||||||||| |||| ||||| |||||    
T  15665067 cgcaattaaggcggaatttccaacacgcaccctcacgctttagcccgaaccaatgggtctgaagcgtggacgatgcgggaatcccaaagatag 15664975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 18862568 - 18862481
Alignment:
Q  257 attaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgata 344  Q
    |||||||||||||||||||||||| || |||||||||  ||  ||||||||||| |||| ||| || ||||| |||||||||||||||    
T  18862568 attaaggcggaatttccaacacacaccatcacgcttctgcccagcccaatgggcatgaagcgtagaggatgcgggaagcccaacgata 18862481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 43972270 - 43972174
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||| |||| ||||||||||||||||||||||||| |||| || |||||||| | ||| || ||| ||| |||  |||||||||| |||||||||    
T  43972270 cgcaatgaaggtggaatttccaacacaccccctcacgtttcagcccggcccaatagacctaaagcgtagacaatgtgggaagcccaatgatagatct 43972174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 46529044 - 46529099
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    ||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||    
T  46529044 aacacaccccctcgcgcttcagcccggcccaatgggcctgaagcgtggacgatgca 46529099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 990756 - 990715
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttca 294  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  990756 cgcaattaaggcggaatttccaacacactccctcacgcttca 990715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 23018385 - 23018328
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggc 310  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| ||||    
T  23018385 cgcaatgaaggcggaattaccaacacaccccctcacgcttcagcctggctcaacgggc 23018328  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 27048556 - 27048592
Alignment:
Q  255 caattaaggcggaatttccaacacaccccctcacgct 291  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  27048556 caattaaggcgggattaccaacacaccccctcacgct 27048592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 37288759 - 37288831
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgataga 346  Q
    |||||| |||||||| ||||| ||  ||||||||||||||||  |||||| ||||||||| || ||| |||||    
T  37288759 aacacagcccctcacccttcagcccagcccaatgggcctgaagtgtggacaatgcaggaaacctaacaataga 37288831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 50057064 - 50056974
Alignment:
Q  259 taaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  50057064 taaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgatagatct 50056974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 44573557 - 44573461
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||  |||||||| |||||||||||    
T  44573557 cgcaattaaggcggaatctccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccgacgatagatct 44573461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 44573870 - 44573774
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||  ||||| |||||| |||||||||||| |||||||| |||||||||||    
T  44573870 cgcaattaaggcggaatttctaacacaccccctcacgcttcagcccggcttaatggccctgaagcgtggacgatgcgggaagcccgacgatagatct 44573774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 22666438 - 22666510
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgataga 346  Q
    ||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22666438 aacacacaccctcacgcttcagcccggcccaacgggcctgaaacgtggacgatgcaggaagcccaacgataga 22666510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 4256149 - 4256054
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||| ||||||||||||| || | |||||| |||||||| ||||||| |||| ||||||||||  ||||||||    
T  4256149 cgcaattaaggcggaatttccaacacacaccctcacgcttcagcccgacccaat-ggcctgaagcgtggacaatgcgggaagcccaagtatagatct 4256054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 48511535 - 48511602
Alignment:
Q  275 acacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||    
T  48511535 acacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgcaggaagcccaacgat 48511602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 10453823 - 10453888
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaa 339  Q
    ||||||||||||||| ||||| |||||| ||||||||| ||| |||||||||||||||||||||||    
T  10453823 aacacaccccctcacacttcagcctggcacaatgggccagaagcgtggacgatgcaggaagcccaa 10453888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 16045266 - 16045335
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||||||| |||| |  ||||||||||||||||| ||||||||||||| |||||||||||||    
T  16045266 aacacaccccctcacgtttcagcacggcccaatgggcctgaagcgtggacgatgcaagaagcccaacgat 16045335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 4255740 - 4255645
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||| ||||||||||||| || | |||||| ||||||||  |||||| |||| |||||| |||  ||||||||    
T  4255740 cgcaattaaggcggaatttccaacacacaccctcacgcttcagcccgacccaat-ggcctgaagtgtggacaatgcgggaagctcaagtatagatct 4255645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 4255967 - 4255872
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||| ||||||||| ||||||||||||| || | |||||| ||||| || ||||||| |||| ||||||||||  ||||||||    
T  4255967 cgcaattaaggcggaattcccaacacacaccctcacgcttcagcccgacccaat-ggcctaaagcgtggacaatgcgggaagcccaagtatagatct 4255872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 9180351 - 9180282
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||| ||||||||||| ||  |||||||||||||| | |||||||||||| ||||||||||||||    
T  9180351 aacacacccactcacgcttcagcccagcccaatgggcctggatcgtggacgatgctggaagcccaacgat 9180282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 14170188 - 14170281
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgataga 346  Q
    |||||| ||||||||| |||||||| ||||| |||||||||| ||   | ||||||||||||| |||||||||||| ||||| ||||| |||||    
T  14170188 cgcaataaaggcggaacttccaacataccccttcacgcttcaacccaactcaatgggcctgaagcgtggacgatgcgggaagtccaacaataga 14170281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 16033194 - 16033263
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||| ||||||||||||| || || |||||||||||||| ||||||| |||||||||||||| ||||    
T  16033194 aacacacaccctcacgcttcagcccggtccaatgggcctgaagcgtggacaatgcaggaagcccagcgat 16033263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 16051429 - 16051498
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||| ||| |||| |  ||||||||||||||||| | |||||||||||||||||||||||||    
T  16051429 aacacacccccttacgtttcagcacggcccaatgggcctgaagcatggacgatgcaggaagcccaacgat 16051498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 16060779 - 16060844
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaa 339  Q
    |||||||||||||||| |||| |  ||||||||||||||||| ||||||||||||| |||||||||    
T  16060779 aacacaccccctcacgtttcagcacggcccaatgggcctgaagcgtggacgatgcaagaagcccaa 16060844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 2799940 - 2800005
Alignment:
Q  277 acaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacga 342  Q
    ||||||||||| |||||| || ||||||||||||||||  | |||| |||||||||||||||||||    
T  2799940 acaccccctcatgcttcagcccggcccaatgggcctgatgcatggatgatgcaggaagcccaacga 2800005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 4255785 - 4255744
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttca 294  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  4255785 cgcaattaaggcggaatttccaacacacaccctcacgcttca 4255744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 10450546 - 10450594
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||||||||||||||||||| || ||| ||||||||||||| ||||||    
T  10450546 aacacaccccctcacgcttcagcccggcacaatgggcctgaagcgtgga 10450594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 9179106 - 9179054
Alignment:
Q  285 tcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagccc 337  Q
    ||||||||||  | |||||||||||||| || |||||| ||||||||||||||    
T  9179106 tcacgcttcagtccggcccaatgggcctaaagcgtggatgatgcaggaagccc 9179054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 31563878 - 31563914
Alignment:
Q  251 atcgcaattaaggcggaatttccaacacaccccctca 287  Q
    ||||||||||||| || ||||||||||||||||||||    
T  31563878 atcgcaattaaggtgggatttccaacacaccccctca 31563914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 349
Target Start/End: Original strand, 3976874 - 3976972
Alignment:
Q  251 atcgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  3976874 atcgcaattaaagcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacaatgcaggaagcccaacgatagatct 3976972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 21214076 - 21214170
Alignment:
Q  255 caattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  21214076 caattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgattgatct 21214170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 3976663 - 3976754
Alignment:
Q  257 attaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||| ||||||||||||||||||| |||||||||  || ||||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  3976663 attaaggtggaatttccaacacacccc-tcacgcttcggcccggcccaacgggcctgaagcgtggacgatgcgggaagcccaacgatagatct 3976754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 3976346 - 3976440
Alignment:
Q  255 caattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||| | ||||||||||||||||||| || ||||| || ||||||| ||||||||| |||||||||||  ||||||||||||||||||||    
T  3976346 caattaaggtgaaatttccaacacaccccctaacacttcagcccggcccaacgggcctgaagcgtggacgatgtgggaagcccaacgatagatct 3976440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 14289130 - 14289059
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatag 345  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  14289130 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtaggaagcccaaagatag 14289059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 343
Target Start/End: Complemental strand, 937023 - 936953
Alignment:
Q  272 ccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||| |||| |||||||||||||||    
T  937023 ccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgtaggaagcccaacgat 936953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 17509023 - 17508929
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||| | ||| |||||||||| ||   ||||||||||||||| ||||||| |||  | ||||||||||||||||||    
T  17509023 gcaattaaggcggaatttccaacaaaaccc-tcacgcttcagcccaacccaatgggcctgaagcgtggacaatgtggaaagcccaacgatagatct 17508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 10862289 - 10862220
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||| |||||||| || ||||||||||||| ||| |||| |||||||||||||| |||||||    
T  10862289 aacacacccccttacgcttcagcccggcccaatgggccagaagcgtgaacgatgcaggaagctcaacgat 10862220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 15961922 - 15961990
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || || |||||||||||||| |||||| ||||||||||||||| ||||    
T  15961922 aacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga-gatgcaggaagcccagcgat 15961990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 10861955 - 10862010
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    ||||||||||||||||||||| || | ||||||||||||||| |||||||||||||    
T  10861955 aacacaccccctcacgcttcagcccgacccaatgggcctgaagcgtggacgatgca 10862010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 28193478 - 28193541
Alignment:
Q  280 ccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgataga 346  Q
    ||||||||||||||| || | ||||||||||||||| ||||||||||||   |||||||||||||||    
T  28193478 ccccctcacgcttcagcccgacccaatgggcctgaagcgtggacgatgc---aagcccaacgataga 28193541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 15962056 - 15962104
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||||||||||||||||||| || || |||||||||||||| ||||||    
T  15962056 aacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga 15962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 32197092 - 32197049
Alignment:
Q  300 gcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    |||||||||||||||| | |||| ||||||||||||||||||||    
T  32197092 gcccaatgggcctgaagcatggatgatgcaggaagcccaacgat 32197049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 32197185 - 32197144
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaa 315  Q
    |||| |||||||||||||||| || |||||||||||||||||    
T  32197185 aacataccccctcacgcttcagcccggcccaatgggcctgaa 32197144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 11349915 - 11349963
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||||||||||||||||||  ||  |||||||||||||||| ||||||    
T  11349915 aacacaccccctcacgcttcggcccagcccaatgggcctgaagcgtgga 11349963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 11720791 - 11720911
Alignment:
Q  19 gttaaacctctgcttccaatttagaatttgagttctgctcttttctgaaaaagaaaac-aaagatttattttccacaatcccc-aaactttatctatcta 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||| ||| || |||||||||    
T  11720791 gttaaacctctgcttccaatttagaatttgagttctgctcttctctgaaaaggaaaacaaaagatttattttccacaagccccaaaaattgatctatcta 11720890  T
Q  117 cccatctctatctgctaacat 137  Q
    ||||||| ||| |||| ||||    
T  11720891 cccatctttatatgcttacat 11720911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 40121807 - 40121903
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||| | ||||||||||    
T  40121807 cgcaattaaggcggaatttccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagccaatcgatagatct 40121903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 30296542 - 30296448
Alignment:
Q  255 caattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||| ||| ||||    
T  30296542 caattaaggcggaatttccaacacaccccctcacgcttcagcctggccaaatgggcctgaagcgtggacgatgcgggaagcccaacaataaatct 30296448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 41670782 - 41670687
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||  ||||||||||  |||||||||| |||||||||    
T  41670782 gcaattaaggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagtgtggacgatgtgggaagcccaatgatagatct 41670687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 37756060 - 37756128
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||    
T  37756060 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgcaggaagcccaacgat 37756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 36270591 - 36270660
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||  |||||||||||||    
T  36270591 aacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcttgaagcccaacgat 36270660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 47346216 - 47346283
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacga 342  Q
    ||||||||||||||||||||| || || |||||||||||||| |||||| |||||||||||||||||||    
T  47346216 aacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga-gatgcaggaagcccaacga 47346283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 11470072 - 11470004
Alignment:
Q  280 ccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||| |||||  | |||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  11470072 ccccctcacccttcagtccggcccaataggcctgaatcgtggacgatgcaggaag-ccaacgatagatct 11470004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 11721041 - 11721154
Alignment:
Q  129 tgctaacatattgacctgttggtatatatctagttaacattaataacaaactgtttcgacaaacatgtatcatctctttataatt-ttttcc-cacctaa 226  Q
    |||| |||| ||||||||| ||||| |||||| ||| ||||||||||||| |||| | || |||||| | | ||| ||||||||| |||||| | |||||    
T  11721041 tgcttacattttgacctgtcggtatctatctatttaccattaataacaaaatgttccaacgaacatgcagcttctttttataattgttttcctcgcctaa 11721140  T
Q  227 atcgtattgttagt 240  Q
    ||||||||||||||    
T  11721141 atcgtattgttagt 11721154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 43384174 - 43384248
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||| || ||||||||| || | ||||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  43384174 aacacaccgccccacgcttcagcccgtcccaatgggcctgaagcgtagaggatgcaggaag-ccaacgatagatct 43384248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 36495870 - 36495818
Alignment:
Q  277 acaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    |||| ||| ||||||||| |||||||||||||||||||| | |||||||||||    
T  36495870 acacacccccacgcttcagcctggcccaatgggcctgaagcatggacgatgca 36495818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 11469613 - 11469566
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgg 321  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||||||||    
T  11469613 aacacaccccctcacgctttagcctggcccaatggtcctaaaacgtgg 11469566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 11469839 - 11469765
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||| |||||||||||||||  | |||||||| |||||||| | |||| ||| ||||||| ||||||||||||||    
T  11469839 aacactccccctcacgcttcagtccggcccaataggcctgaagcatggatgatccaggaag-ccaacgatagatct 11469765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 14742734 - 14742808
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||| | || | |||||||||  |||| |||||||||||||| |||||||| | |||||||    
T  14742734 aacacaccccctcacgcttaagcccgacccaatgggt-tgaagcgtggacgatgcagaaagcccaaagttagatct 14742808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 36092527 - 36092566
Alignment:
Q  309 gcctgaaacgtggacgatgcaggaagcccaacgatagatc 348  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  36092527 gcctgaagcgtggacgatgcaggaagcccaacgattgatc 36092566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 24240300 - 24240366
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacga 342  Q
    ||||||||||||||||||||| || || |||||||| | ||| |||| | |||||||||||||||||||    
T  24240300 aacacaccccctcacgcttcagcccggtccaatgggac-gaagcgtgta-gatgcaggaagcccaacga 24240366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 8143933 - 8143837
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  8143933 cgcaattaaggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaatagatct 8143837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 21067246 - 21067342
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  21067246 cgcaattaaggcggaatttccaacacaccccctcacgctccagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccaacaatagatct 21067342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 21089037 - 21089133
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| ||||||||||| ||| ||||    
T  21089037 cgcaattaaggcagaatttccaacacaccccctcacgctccagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaatatatct 21089133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 19753793 - 19753889
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| | | |||||||| ||||| |||| |||||||||    
T  19753793 cgcaattaaggcggaatttccaacacacaccctcacgcttcagcccggcccaatgggcctgaagcattgacgatgcgggaagaccaatgatagatct 19753889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 28068321 - 28068388
Alignment:
Q  282 ccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  28068321 ccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccaacgatagatct 28068388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 22911370 - 22911432
Alignment:
Q  260 aaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    |||| ||||||||||| ||||||| |||||||||| ||| ||||||||||||| || ||||||    
T  22911370 aaggtggaatttccaagacaccccgtcacgcttcagcctagcccaatgggcctaaagcgtgga 22911432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 13674038 - 13673990
Alignment:
Q  301 cccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||| |||||| ||||| | ||||||||||||||||||    
T  13674038 cccaatgggcctgaagcgtggatgatgccgaaagcccaacgatagatct 13673990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 22889764 - 22889816
Alignment:
Q  260 aaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcct 312  Q
    |||| ||||||||||| ||||||| |||||||||| ||| |||||||||||||    
T  22889764 aaggtggaatttccaagacaccccatcacgcttcagcctagcccaatgggcct 22889816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 32216137 - 32216042
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||| ||| ||||  |||||||||||||| |||||||||| |||| |||||| || || ||  || |||||||| ||||| ||||||||| ||||    
T  32216137 cgcaataaagacggagcttccaacacacccc-tcacgcttcagcctgacccaataggactaaagtgtagacgatgcgggaagtccaacgatatatct 32216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 21653557 - 21653462
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  21653557 gcaattaaggcggaatttccaatacaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcgggaagcccaacgatagatct 21653462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 21653718 - 21653623
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||||||||||||| || |||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||| |||||||||    
T  21653718 gcaattaaggcggaatttcaaatacaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcaggaagcccaatgatagatct 21653623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 8605473 - 8605404
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  8605473 aacacaccccctcacgcttcagcccggcccaatgggcctgaatcgtggacgatgcaggaagcccaacgat 8605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 39587978 - 39588049
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagat 347  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||||| || |||||||||||||||||||||    
T  39587978 aacacaccccctcacgcttcagcctggcccaatgggcct--agcgtggatgaggcaggaagcccaacgatagat 39588049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 38287858 - 38287927
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || |  |||||||||||||| ||||||||||| || ||||||||||||    
T  38287858 aacacaccccctcacgcttcagcccgatccaatgggcctgaagcgtggacgatgtagaaagcccaacgat 38287927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 3183791 - 3183880
Alignment:
Q  260 aaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    ||||||||| |||||||||| ||||||| |||||| |   | ||||||||| |||| |||| || |||||||||||||||| ||||||||    
T  3183791 aaggcggaacttccaacacatcccctcatgcttcagctctgtccaatgggcttgaagcgtgaacaatgcaggaagcccaacaatagatct 3183880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 34248299 - 34248265
Alignment:
Q  254 gcaattaaggcggaatttccaacacaccccctcac 288  Q
    ||||| |||||||||||||||||||||||||||||    
T  34248299 gcaataaaggcggaatttccaacacaccccctcac 34248265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 9596141 - 9596185
Alignment:
Q  302 ccaatgggcctgaaacgtggacgatgcaggaagcccaacgataga 346  Q
    ||||| ||| |||| |||||||||||||||||||||||| |||||    
T  9596141 ccaataggcttgaagcgtggacgatgcaggaagcccaacaataga 9596185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 20735752 - 20735657
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||  |||| |||||||||    
T  20735752 cgcaataaaggcggaatt-ccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaaatccaatgatagatct 20735657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 19614230 - 19614146
Alignment:
Q  267 aatttccaacacaccccctcacgcttcaccctggcccaa--tgggcctgaaacgtggacgatgcaggaagcccaacgatagatct 349  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||  ||||||||| ||||||||||    
T  19614230 aatttccaacacaccccctcacgcttcagcctggcccaatgtgggcctgaagcgtggacgatgtgggaagcccagcgatagatct 19614146  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 29228657 - 29228589
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacgat 343  Q
    ||||||||||||||||||||| || |||||||||||||||||  ||||| ||||||||||||||||||||    
T  29228657 aacacaccccctcacgcttcagcccggcccaatgggcctgaagtgtgga-gatgcaggaagcccaacgat 29228589  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 45858862 - 45858807
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  45858862 aacacaccctctcacgcttcagcccggcccaatgggcctgaaacgtggacgatgca 45858807  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 30604582 - 30604646
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaa 339  Q
    ||||||||||||||||||||| || || ||||||||||||||  ||||| ||||||||||||||||    
T  30604582 aacacaccccctcacgcttcagcccggtccaatgggcctgaagtgtgga-gatgcaggaagcccaa 30604646  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 8520282 - 8520341
Alignment:
Q  253 cgcaattaaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctg 313  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  8520282 cgcaattaaggcagaatt-ccaacacaccccctcacgcttcagcccagcccaatgggcctg 8520341  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 4187404 - 4187474
Alignment:
Q  274 aacacaccccctcacgcttca---ccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacga 342  Q
    ||||||||||||||| |||||   ||| ||||||||||||||||| | |||| |||||||||||||||||||    
T  4187404 aacacaccccctcacacttcagccccccggcccaatgggcctgaagcatgga-gatgcaggaagcccaacga 4187474  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 27957953 - 27958009
Alignment:
Q  286 cacgcttcaccctggcccaatgggcctgaaacgtggacgatgcaggaagcccaacga 342  Q
    ||||||||| || ||||||||||||||||| |||||||||  | |||||||||||||    
T  27957953 cacgcttcagcccggcccaatgggcctgaagcgtggacgacactggaagcccaacga 27958009  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 17294849 - 17294801
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||||||||||||||||| | ||  |||||||||||||||| ||||||    
T  17294849 aacacaccccctcacgctttagcccagcccaatgggcctgaagcgtgga 17294801  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 17294960 - 17294912
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    ||||||||||||||||||| | ||  |||||||||||||||| ||||||    
T  17294960 aacacaccccctcacgctttagcccagcccaatgggcctgaagcgtgga 17294912  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 165767 - 165712
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    ||||||||||||||||||||| || |||||||||||||||||  ||||||||||||    
T  165767 aacacaccccctcacgcttcagcccggcccaatgggcctgaagtgtggacgatgca 165712  T

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Target: scaffold0785 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 3017 - 3072
Alignment:
Q  274 aacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtggacgatgca 329  Q
    ||||||||||||||||||| | |||||||||||| ||||||| |||||||| ||||    
T  3017 aacacaccccctcacgctttaacctggcccaatgtgcctgaagcgtggacggtgca 3072  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 11223 - 11285
Alignment:
Q  260 aaggcggaatttccaacacaccccctcacgcttcaccctggcccaatgggcctgaaacgtgga 322  Q
    |||| ||||||||||| ||||||| |||||||||| ||| ||||||||||||| || ||||||    
T  11223 aaggtggaatttccaagacaccccgtcacgcttcagcctagcccaatgggcctaaagcgtgga 11285  T

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