View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20235_high_17 (Length: 349)
Name: NF20235_high_17
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 45590458 - 45590133
Alignment:
| Q |
1 |
atacaacgcaactcattttagttattttccaattaaattaaaagggaatggataaagagaaacataaccttctgaagaataaacaatttatcataaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45590458 |
atacaacgcaactcattttagttattttccaattaaattaaaagggaatggataaagagaaacataaccttctgaagaataaacaatttatcataaagat |
45590359 |
T |
|
| Q |
101 |
gaagaatgaattccaaattagcatcagaattgcggttctttatattaacagcaacagtttctttgttatcctttatccacttgaagtctatagtagcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45590358 |
gaagaatgaattccaaattagcatcagaattgcggttctttatattaacagcaacagtttctttgttatcctttatccacttgaagtctatagtagcttt |
45590259 |
T |
|
| Q |
201 |
ccattgaggttttccacctacaataacaacgtt-ttttaacttcaattacattgttaaggaatgagaaacaaactaaaagnnnnnnngaattaagagaag |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45590258 |
ccattgatgttttccacctacaataacaacgttttttttacttcaattacattgttaaggaatgagaaacaaactaaaa----aaaagaattaagagaag |
45590163 |
T |
|
| Q |
300 |
agggaaatgaatgaccttggtcgtcggaga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45590162 |
agggaaatgaatgaccttggtcgtcggaga |
45590133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University