View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_21 (Length: 336)
Name: NF20235_high_21
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 5445253 - 5444950
Alignment:
| Q |
19 |
aaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaa |
118 |
Q |
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| T |
5445253 |
aaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaa |
5445154 |
T |
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| Q |
119 |
ggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaagaagaatggcgttttggttagtgaactgagaata |
218 |
Q |
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| T |
5445153 |
ggtcaatgcctatggctttgctttttcttgttgccattgcacttaatttgagaggagagaacaaaagaagaatggtgttttggttagtgaaccgagaata |
5445054 |
T |
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| Q |
219 |
tggatctgattgatcaaaaggtagtttttataggcctaagagaacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaa |
318 |
Q |
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| T |
5445053 |
tggatctgattgatcaaaaggtagtttttataggcataagagaacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaa |
5444954 |
T |
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| Q |
319 |
taat |
322 |
Q |
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|||| |
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| T |
5444953 |
taat |
5444950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 5440993 - 5441182
Alignment:
| Q |
50 |
cttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgt |
149 |
Q |
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| T |
5440993 |
cttggtcgtttggaatgatctcaacatgattgtgttgccactctcaaatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttat |
5441092 |
T |
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| Q |
150 |
tgccattgca---cttaatttgagaggagagaacaaaagaagaatggcgttttggttagtgaactgagaatatggatctgattgatcaaaa |
237 |
Q |
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| T |
5441093 |
tgccacgacaaacgagagtttgagaggagagaacaaaagaa-aatgatgttttgggtagtaaactgaaaatctggatgtgattgataaaaa |
5441182 |
T |
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