View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_25 (Length: 308)
Name: NF20235_high_25
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 33298902 - 33298621
Alignment:
| Q |
19 |
ctctaagcaaggaccaaagaaacattattggtccacaaatcaacactaaaaatgaaaaagaaagggttaagttaagatgagtccaattactgtgatcttc |
118 |
Q |
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| T |
33298902 |
ctctaagcaaggaccaaagaaacattattggtccacaaatcaacactaaaaatgaaaaagaaagggttaagttaagatgagtccaattactgtgatcttc |
33298803 |
T |
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| Q |
119 |
aaaatcaatgaaataggagataaaatgattaacactaaatcttaccattgctccatagaagaccaaatatattgagaccactagctttacctatgaaaaa |
218 |
Q |
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| T |
33298802 |
aaaatcaatgaaataggagataaaatgattaacactaaatcttaccattgctccatagaagaccaaatatattgagaccactagctttacctatgaaaaa |
33298703 |
T |
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| Q |
219 |
ttttcaagtagtatatgagattcaatgatagactcaaaaaatagtcaaatgaatgtggcatagcaagaaacattgttcatct |
300 |
Q |
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| T |
33298702 |
ttttcaagtagtatatgagattcaatgatagactcaaaaaatagtcaaatgaatgtgacatagcaagaaacattgttcatct |
33298621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 33317940 - 33317887
Alignment:
| Q |
164 |
cattgctccatagaagaccaaatatattgagaccactagctttacctatgaaaa |
217 |
Q |
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| T |
33317940 |
cattgctgtatagaataccaaatatattaagaccactagctttacctttgaaaa |
33317887 |
T |
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