View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_high_27 (Length: 302)

Name: NF20235_high_27
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_high_27
NF20235_high_27
[»] chr7 (8 HSPs)
chr7 (18-289)||(34091426-34091696)
chr7 (69-190)||(20463986-20464107)
chr7 (74-207)||(24870392-24870525)
chr7 (69-221)||(12239628-12239779)
chr7 (91-185)||(1840648-1840741)
chr7 (137-219)||(24871395-24871477)
chr7 (68-221)||(30108190-30108343)
chr7 (110-221)||(24533346-24533458)
[»] chr6 (2 HSPs)
chr6 (51-241)||(28612132-28612321)
chr6 (69-186)||(11931950-11932066)
[»] chr3 (8 HSPs)
chr3 (60-221)||(40574309-40574470)
chr3 (51-207)||(33709804-33709959)
chr3 (51-221)||(52653734-52653903)
chr3 (69-221)||(31362247-31362399)
chr3 (51-145)||(23686069-23686163)
chr3 (51-145)||(24058306-24058400)
chr3 (112-189)||(16729771-16729848)
chr3 (257-285)||(33709711-33709739)
[»] chr2 (4 HSPs)
chr2 (60-285)||(14218881-14219106)
chr2 (69-219)||(38327394-38327543)
chr2 (80-221)||(34681118-34681256)
chr2 (57-185)||(8367233-8367359)
[»] chr1 (8 HSPs)
chr1 (51-241)||(49061312-49061503)
chr1 (69-241)||(49053732-49053905)
chr1 (68-219)||(52282015-52282168)
chr1 (51-218)||(42263416-42263583)
chr1 (69-231)||(50059444-50059606)
chr1 (85-189)||(12634477-12634581)
chr1 (68-221)||(10917480-10917627)
chr1 (91-184)||(17458408-17458501)
[»] chr8 (4 HSPs)
chr8 (69-235)||(12729336-12729502)
chr8 (68-189)||(14546282-14546402)
chr8 (51-216)||(44729042-44729207)
chr8 (88-219)||(28696109-28696236)
[»] scaffold0007 (1 HSPs)
scaffold0007 (69-221)||(217709-217861)
[»] chr5 (8 HSPs)
chr5 (57-219)||(29006447-29006609)
chr5 (79-218)||(9851458-9851596)
chr5 (68-168)||(9080655-9080755)
chr5 (65-221)||(36203052-36203207)
chr5 (120-159)||(11042849-11042888)
chr5 (116-216)||(26900465-26900565)
chr5 (257-285)||(29006369-29006397)
chr5 (257-285)||(36203013-36203041)
[»] chr4 (7 HSPs)
chr4 (51-190)||(48779846-48779985)
chr4 (68-183)||(24391833-24391946)
chr4 (73-219)||(27538101-27538247)
chr4 (51-184)||(47078027-47078155)
chr4 (68-189)||(20251402-20251523)
chr4 (117-219)||(24129395-24129497)
chr4 (117-180)||(25328623-25328686)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 34091426 - 34091696
Alignment:
Q  18 tcaatcggttgcaagaaagtatctgggccaataccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggt 117  Q
    |||||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  34091426 tcaatcggttgcaaaaaagtatctgg-ccaattccttttagaatattatagaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggt 34091524  T
Q  118 agtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtg 217  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  34091525 agtttacaaagtaaagttctctcaatttctctcatgcattagagaaaagaatgaatgatttaatattattttcggcggaattttgactcataataatgtg 34091624  T
Q  218 atttctgtctctatttttctgaatgnnnnnnngcctctcaagtgtctctatttatagagaaacttatgatct 289  Q
    |||| |||||||||||||||||||        | ||||||||||||| |||||||| ||||| |||||||||    
T  34091625 atttttgtctctatttttctgaatatttttctgtctctcaagtgtctttatttataaagaaatttatgatct 34091696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 20464107 - 20463986
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    ||||||| ||| |||||||||||||||||||| ||||| ||| |||| | ||||  |||||||| ||||||||||||||||| | |||||||| ||  ||    
T  20464107 aatccttaacgagacttgcacattcacaccaagcatatcgatcaatgattgtttgtaaaataaatttctgtcaatttctctcgtacattagagtaagtaa 20464008  T
Q  169 tgaatgatttagtattattttc 190  Q
      ||||||||||||||||||||    
T  20464007 ataatgatttagtattattttc 20463986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 24870525 - 24870392
Alignment:
Q  74 ttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaat 173  Q
    ||||||| |||| || ||| ||||||| | ||| ||| |||| ||||||||| ||||||||||| ||||||| |||| |||| |||||||||||| || |    
T  24870525 ttgacgttactttcatatttacaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagact 24870426  T
Q  174 gatttagtattattttcagcggaattttgactca 207  Q
     |||||||||||||||  || |||||||| ||||    
T  24870425 tatttagtattatttttggcagaattttgtctca 24870392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 12239628 - 12239779
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    |||||||||||||||||||||||||||||||| | ||| ||  ||||||||||| || ||||||||| ||||||||| |||  |  | |||||| |||||    
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttccagaataaagttttgtcaatttatctagtatactagagataagaa 12239726  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
     |||| ||||| |||||||||| || ||||| | || || || ||||||||||    
T  12239727 agaataatttaatattattttcggcagaattctaacacacaacaatgtgattt 12239779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 1840741 - 1840648
Alignment:
Q  91 ttcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtatta 185  Q
    ||||||||||  |||| ||| |||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||| | || |||||||||||    
T  1840741 ttcacaccaaatatatcgatcaatgatagtttacataataaagatctgtcaatttctctcatgcatttgagaaaagaaag-attatttagtatta 1840648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 24871477 - 24871395
Alignment:
Q  137 tgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgat 219  Q
    |||||||| ||||| |||| |  ||||||||  |||||||||| |||||||||| || ||||||||||||| |||||||||||    
T  24871477 tgtcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgat 24871395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 30108190 - 30108343
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    |||||||||| |||| ||||||||||| || |||| ||| ||| || | ||||||| | ||||||||| | |||| |  |||  ||  ||| ||||||||    
T  30108190 gaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaagatagtttatagaataaagttttctcaactaatcttgtgtgttacagaaaaga 30108289  T
Q  168 atgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
    |  |||||||||||||||||||| ||  ||| |||||||| || ||||||||||    
T  30108290 agaaatgatttagtattattttcggcataatgttgactcacaagaatgtgattt 30108343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 24533458 - 24533346
Alignment:
Q  110 ttaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgat---ttagtattattttcagcggaattttgactc 206  Q
    |||||||||||||||| | ||| ||||| |||||| ||||  |||| |||||||||||| |||| ||   ||||||| |||||| ||  || ||||||||    
T  24533458 ttaatggtagtttacaga-taatgttctttcaattactcttgtgcactagagaaaagaaagaataatttattagtataattttcggcaaaactttgactc 24533360  T
Q  207 ataataatgtgattt 221  Q
    |||| ||||||||||    
T  24533359 ataa-aatgtgattt 24533346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 28612132 - 28612321
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    ||||| ||||||| || ||||||||||||||||||| ||||||||||||| ||||| | | ||||||||| ||||||| || |||||||||||| | |||    
T  28612132 cccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctc 28612231  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgatttctgtctctatttttctgaat 241  Q
     |||| |||||| ||||| |||||||||||||| |||||| || |||||| |||||| || |||||||||| |||||||||||||||||||    
T  28612232 gtgcactagagataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgattt-tgtctctatttttctgaat 28612321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 11932066 - 11931950
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    ||||||||| |||||||||  |||||||||||   ||| ||  |||||||||||| | |||||| ||||||||| ||||||| |||| |||| |||||||    
T  11932066 aatccttgatgtgacttgcttattcacaccaagtttatcgac-aatggtagtttatagaataaaattctgtcaaattctctcgtgcactagataaaagaa 11931968  T
Q  169 tgaatgatttagtattat 186  Q
     ||||||| |||||||||    
T  11931967 agaatgatatagtattat 11931950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 40574309 - 40574470
Alignment:
Q  60 atactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattag 159  Q
    ||||||| ||||| |||||||||||||||||||||||| || | |||  || |||| ||||||||| |||||||||||||||||||||||| |||| |||    
T  40574309 atactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactag 40574408  T
Q  160 agaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
    ||||||||| |||||||||| |||||||||| || ||||||||||||| || ||||||||||    
T  40574409 agaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattt 40574470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 33709959 - 33709804
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||| | ||| ||  |||||||||||||| |||||||||||||||| ||||||     
T  33709959 ccctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcgac-aatggtagtttacagaataaagttctgtcaaattctctg 33709861  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactca 207  Q
     |||| |||||||||||| |||||||||||||| |||||| ||  ||||| ||||||    
T  33709860 gtgcactagagaaaagaaagaatgatttagtataattttcggcaaaatttagactca 33709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 52653903 - 52653734
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    ||||| || |||| || ||||||||||||||||||||||||||||| |||   ||| ||  |||||||||||||| |||||||||||||||||||  |||    
T  52653903 cccttcaggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgac-aatggtagtttacagaataaagttctgtcaattttcctc 52653805  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
     |||| |||||||||| | |||||||||||||| ||||||||| ||||||  ||||| || ||||| ||||    
T  52653804 gtgcactagagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattt 52653734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 31362247 - 31362399
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    |||||||||||  ||||  ||||||||||||| | ||| |||  || ||||||||||||||||||||||||||||||  ||| |||| || | |||| ||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataa 31362346  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
      ||  ||||||||||||||||  | ||||||||||||| || ||||||||||    
T  31362347 aaaaaaatttagtattattttcgacagaattttgactcacaagaatgtgattt 31362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 23686163 - 23686069
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaattt 145  Q
    |||||||| |||| ||  ||| |||||||||| ||| ||||||||||||| ||||| ||| | |||||||||||| |||||| || |||||||||    
T  23686163 ccctttaggatacgatgaaattcttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttacagaataaaattttgtcaattt 23686069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 24058400 - 24058306
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaattt 145  Q
    |||||||| |||| ||  ||| |||||||||| ||| ||||||||||||| ||||| ||| | |||||||||||| |||||| || |||||||||    
T  24058400 ccctttaggatacgatgaaattcttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttacagaataaaattttgtcaattt 24058306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 16729848 - 16729771
Alignment:
Q  112 aatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattatttt 189  Q
    |||| ||||||||||||||||||| |||||||||   || |||| || | ||||||| |||||||||| |||||||||    
T  16729848 aatgatagtttacaaaataaagttatgtcaattttcttcgtgcactaaataaaagaaagaatgatttaatattatttt 16729771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 33709739 - 33709711
Alignment:
Q  257 aagtgtctctatttatagagaaacttatg 285  Q
    |||||||||||||||||||||||||||||    
T  33709739 aagtgtctctatttatagagaaacttatg 33709711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 14218881 - 14219106
Alignment:
Q  60 atactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattag 159  Q
    |||||||||||||  |||| |||| || ||||||||||||| | |||  || |||| ||||||||||||||||||||| |||||||  ||| |||| |||    
T  14218881 atactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaattttcctcgtgcactag 14218980  T
Q  160 agaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgatttctgtctctatttttctgaatgnnnnnnngcctctcaag 259  Q
    ||||||||| |||||||||||||||||||| |||  |||||||||||| ||||||||||||| |||  |||||||| |||||        ||  |  |||    
T  14218981 agaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttttgtacctatttttttgaattattttctgctgccaaag 14219080  T
Q  260 tgtctctatttatagagaaacttatg 285  Q
    ||||||||||||||||||||||||||    
T  14219081 tgtctctatttatagagaaacttatg 14219106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 38327394 - 38327543
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    ||||||||||||||||| |||||||||||||| |  || ||| ||||||| |||||| ||||||||| || ||||||||||| |||| ||||||||  |     
T  38327394 aatccttgacgtgacttacacattcacaccaaacgcatcgatcaatggtaatttacataataaagttttggcaatttctctc-tgcagtagagaaagtat 38327492  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtgat 219  Q
     |||||||||  |||||||||||||  | |||| |||||  ||||||||||    
T  38327493 agaatgatttcatattattttcagcatagtttttactcacgataatgtgat 38327543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 34681118 - 34681256
Alignment:
Q  80 tgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgattta 179  Q
    ||||||||||||||||| ||| | ||| ||| |||| ||||||||  ||||||||| |||||||||||||| | ||  ||||||||||| ||   |||      
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcaccagagaaaagaaaga---attag 34681214  T
Q  180 gtattattttcagcggaattttgactcataataatgtgattt 221  Q
    || |||||||| ||  |||||||||||| || ||||||||||    
T  34681215 gtgttattttcggcataattttgactcacaagaatgtgattt 34681256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 8367359 - 8367233
Alignment:
Q  57 agaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcat 156  Q
    |||||||| |||||||||| ||||||||||||||||| |||| ||  ||| ||| |||  ||||| | | ||||||||| |||| |||||||  | |||     
T  8367359 agaatactttagaatccttaacgtgacttgcacattcccacctat-gtatcgatcaataatagttcatagaataaagttatgtcgatttctcatacgcac 8367261  T
Q  157 tagagaaaagaatgaatgatttagtatta 185  Q
    |||| ||||||||||| ||||| ||||||    
T  8367260 tagataaaagaatgaa-gatttggtatta 8367233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 49061503 - 49061312
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    ||||| ||||||| || ||||||||||||||| ||||||||||||||||| ||||| ||  |||||||||||||| ||||||||| |||||||||| |||    
T  49061503 cccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcgac-aatggtagtttacagaataaagttttgtcaatttccctc 49061405  T
Q  151 atgcattagagaaaagaatgaatgatttagtatta-ttttcagcggaattttgactcataataatgtga-tttctgtctctatttttctgaat 241  Q
     |||| |||||||||||| |||||||||||||| | ||||| || ||||| |||| || || ||||||| ||| |||||||||||||||||||    
T  49061404 gtgcactagagaaaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctctatttttctgaat 49061312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 49053905 - 49053732
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    |||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||| ||||||| ||| |||| ||||||| ||||    
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgac-aatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaa 49053807  T
Q  169 tgaatgatttagtatta-ttttcagcggaattttgactcataataatgtga-tttctgtctctatttttctgaat 241  Q
     |||||||||||||| | ||||  || ||||| |||| || || ||||||| ||| |||||||||||||| ||||    
T  49053806 agaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctctatttttcagaat 49053732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 52282015 - 52282168
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatt--tctctcatgcattagagaaaa 165  Q
    ||||| ||||| ||||||||| ||||||||||| |  || ||| |||||||||||||| ||||||||| ||||||||  ||||||||||| |||||||||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  166 gaatgaatgatttagtattattttcagcggaattttgactcataataatgtgat 219  Q
    ||| |||||||||| |||||||||||   ||||||  |||||||| ||||||||    
T  52282115 gaaagaatgatttaatattattttcaatagaatttaaactcataaaaatgtgat 52282168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 42263416 - 42263583
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    ||||| || ||||| || |||| ||||| ||||||||||||||| || || | ||| ||  |||| || ||||||||| |||||| |||| |||||||||    
T  42263416 cccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttttgtcgatttctctc 42263515  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtga 218  Q
     |||| |||||||||||| ||||||| ||||||||||||  || | ||||||||||| || |||||||    
T  42263516 gtgcactagagaaaagaaagaatgatatagtattattttaggcagtattttgactcacaagaatgtga 42263583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 50059606 - 50059444
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    |||||| ||||||||||  | ||||||| | | | ||| ||| |||| ||||||| | ||||||||||||| |||||||||| |||| ||||||||| ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtgatttctgtctctat 231  Q
     |||||||| |||||||||||   | ||||||||| ||| || |||||| ||| ||| |||||    
T  50059506 agaatgattcagtattattttttacagaattttgattcacaagaatgtgttttttgtatctat 50059444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 12634581 - 12634477
Alignment:
Q  85 tgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtatt 184  Q
    |||||||||||  ||| ||| | ||| ||||||| |||||| ||||||||||||||||||||||| ||||| || |||||||||  ||  ||||||||||    
T  12634581 tgcacattcacttcaaacatgttgatcaatggtaatttacagaataaagttctgtcaatttctctaatgcactaaagaaaagaaaaaagcatttagtatt 12634482  T
Q  185 atttt 189  Q
    |||||    
T  12634481 atttt 12634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 10917627 - 10917480
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    ||||||||||||||||||||||||||||||      ||| ||| |||| || |||||||||| || |||| |   || ||| | |||| |||||||||||    
T  10917627 gaatccttgacgtgacttgcacattcacac------tatagatcaatgatattttacaaaatcaaattctctggtttactcccgtgcactagagaaaaga 10917534  T
Q  168 atgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
    |  |||||||| ||||||||||| || ||| ||||||| | || ||||||||||    
T  10917533 agaaatgattttgtattattttcggcagaactttgacttacaagaatgtgattt 10917480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 17458501 - 17458408
Alignment:
Q  91 ttcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtatt 184  Q
    |||| ||||| | ||| ||| |||| ||||||||||||||||||| | || |||  |||| |||| |||||||| ||| |||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtatt 17458408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 12729502 - 12729336
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    |||||||||| ||||||||||||||||||||| ||||| ||  ||| |||||||||  |||||||||||||||||||||||| |||| ||||||||||||    
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgac-aattgtagtttactgaataaagttctgtcaatttctctcgtgcactagagaaaagaa 12729404  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtga-tttctgtctctattttt 235  Q
     |||| ||||||||| |||||| || |||||||||| || || ||||||| ||||||||| |||||||    
T  12729403 agaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtctatattttt 12729336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 14546282 - 14546402
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    |||||| |||| ||||||||||||||||||||| | ||| ||| ||||||| |||||| | ||||||| ||||||||||||| || ||||||||||||||    
T  14546282 gaatccgtgacatgacttgcacattcacaccaaac-tatcgatcaatggtactttacatactaaagttatgtcaatttctctgattcattagagaaaaga 14546380  T
Q  168 atgaatgatttagtattatttt 189  Q
    | ||||||||||||||||||||    
T  14546381 aagaatgatttagtattatttt 14546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 44729207 - 44729042
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    |||||||| ||||  | ||||||||||||||||||||||||||| ||||| | ||| ||| |||| ||||||||| |||  |||  ||||||| ||||||    
T  44729207 ccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaatgtagt--tgtcaatctctctc 44729110  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttcagcggaa--ttttgactcataataatgt 216  Q
     |||| ||| |||| ||| |||||| ||| |||||||||| || |||  |||||||||| ||||||||    
T  44729109 gtgcactagggaaatgaaagaatgacttaatattattttcggctgaattttttgactcacaataatgt 44729042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 28696109 - 28696236
Alignment:
Q  88 acattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattatt 187  Q
    ||||||||||||| | ||| ||| |||| || |||| | |||||||||||||||||||  ||| |||  | |||||||||| |||||||| |    ||||    
T  28696109 acattcacaccaagcgtattgatcaatgataatttatagaataaagttctgtcaattttcctcgtgccctggagaaaagaaagaatgattca----tatt 28696204  T
Q  188 ttcagcggaattttgactcataataatgtgat 219  Q
    |||||| |||||| |||||| || ||||||||    
T  28696205 ttcagctgaatttagactcacaagaatgtgat 28696236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 217861 - 217709
Alignment:
Q  69 aatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaa 168  Q
    ||||||||| | ||||||||||||||||||||   ||| ||| |||||||||||||||||||| |||||| ||||||||||| || | ||||||||||||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  169 tgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
     |||| |||||| ||||||||| || ||||| |||| || || ||||||||||    
T  217761 agaattatttagaattattttcggcagaattctgacacacaacaatgtgattt 217709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 29006609 - 29006447
Alignment:
Q  57 agaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtag-tttacaaaataaagttctgtcaatttctctcatgca 155  Q
    ||||||| || ||||||||||| |||| | |||||||||||||| | ||| | | |||| ||| |||||| |||||||||||||||| || |||| ||||    
T  29006609 agaatacaatggaatccttgacatgacatacacattcacaccaagcgtatcg-tcaatgttagttttacagaataaagttctgtcaacttatctcgtgca 29006511  T
Q  156 ttagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgtgat 219  Q
     |||| |||||||||||||||||||||| ||||| ||| |||||| |||||| || ||||||||    
T  29006510 ctagaaaaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtgat 29006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 9851458 - 9851596
Alignment:
Q  79 gtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgattt 178  Q
    |||| ||||||||||||||||| | ||| ||  ||||||  |||||| ||||||||| |||||  ||||||  |||| |||||||||||| || ||||||    
T  9851458 gtgatttgcacattcacaccaagcgtatcgac-aatggtgttttacagaataaagttttgtcacattctcttgtgcactagagaaaagaaagactgattt 9851556  T
Q  179 agtattattttcagcggaattttgactcataataatgtga 218  Q
    |||||||||||  || ||||||||||||| ||||||||||    
T  9851557 agtattatttttggcagaattttgactcacaataatgtga 9851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 9080655 - 9080755
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    |||| |||||||| |||||||||||||||  || | ||| ||| |||||||||||||||||||||||||| |||||| ||||| || | |||||||||||    
T  9080655 gaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttctctcaattgctctcgtgtactagagaaaaga 9080754  T
Q  168 a 168  Q
    |    
T  9080755 a 9080755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 36203207 - 36203052
Alignment:
Q  65 atagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaa 164  Q
    ||||||||||||||||||||||||| |||||| |||   |||     |||||||| |||||||||||||||||| ||| ||||||| | || || ||||     
T  36203207 atagaatccttgacgtgacttgcacgttcacatcaagtgtatctgc-aatggtagcttacaaaataaagttctgacaaattctctcgtacactaaagaag 36203109  T
Q  165 agaatgaatgatttagtattattttcagcggaattttgactcataataatgtgattt 221  Q
    |||| |||| ||||||||| |||||| || |||||| |||||| |  ||||||||||    
T  36203108 agaacgaataatttagtataattttcggcagaatttagactcacaccaatgtgattt 36203052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 11042849 - 11042888
Alignment:
Q  120 tttacaaaataaagttctgtcaatttctctcatgcattag 159  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11042849 tttacaaaataaagttcagtcaatttctctcatgcattag 11042888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 26900565 - 26900465
Alignment:
Q  116 gtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatg 215  Q
    |||||||| |||||||| || ||||| |||| ||| || | || ||||||||| || | ||||||||||||||||| |  |||||||||||| || ||||    
T  26900565 gtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcacaagaatg 26900466  T
Q  216 t 216  Q
    |    
T  26900465 t 26900465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 29006397 - 29006369
Alignment:
Q  257 aagtgtctctatttatagagaaacttatg 285  Q
    |||||||||||||||||||||||||||||    
T  29006397 aagtgtctctatttatagagaaacttatg 29006369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 36203041 - 36203013
Alignment:
Q  257 aagtgtctctatttatagagaaacttatg 285  Q
    |||||||||||||||||||||||||||||    
T  36203041 aagtgtctctatttatagagaaacttatg 36203013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 48779846 - 48779985
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    ||||| || |||||||  |||| ||||||||||||||||||||||||||| |||||  || |||| ||||||| | ||||||||| ||||| ||| | ||    
T  48779846 cccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaataaagttatgtcagtttatgtc 48779945  T
Q  151 atgcattagagaaaagaatgaatgatttagtattattttc 190  Q
     |||| ||||||||| ||||||||||||| ||||||||||    
T  48779946 gtgcactagagaaaataatgaatgatttaatattattttc 48779985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 24391946 - 24391833
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    |||||||||  ||||||||||||| |||||||| | ||| ||  |||| ||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  24391946 gaatccttggtgtgacttgcacat-cacaccaaacgtatcgac-aatgatagtttacagaataaagttatgtcaatttctctcatgcactagagaaaaga 24391849  T
Q  168 atgaatgatttagtat 183  Q
    | ||||||||||||||    
T  24391848 aagaatgatttagtat 24391833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 27538101 - 27538247
Alignment:
Q  73 cttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaa 172  Q
    ||||| |||||||||||||| | || || ||||| ||| ||||   ||||||| ||| ||||| ||||||||||||| ||||||||||||||  || |||    
T  27538101 cttgatgtgacttgcacatttatactaaacatatcgatcaatgaccgtttacagaattaagttatgtcaatttctcttatgcattagagaaattaaagaa 27538200  T
Q  173 tgatttagtattattttcagcggaattttgactcataataatgtgat 219  Q
    |||||||||||||||||| || ||||||| || || || ||||||||    
T  27538201 tgatttagtattattttcggcagaattttcacccacaagaatgtgat 27538247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 47078027 - 47078155
Alignment:
Q  51 ccctttagaatactatagaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctc 150  Q
    |||||||| |||| || |||||||||||||||||| |||||| ||||||| |     ||| |||| ||||||||| ||||||||||||||||||||||||    
T  47078027 ccctttaggataccatggaatccttgacgtgacttacacatttacaccaaac-----gatcaatgttagtttacagaataaagttctgtcaatttctctc 47078121  T
Q  151 atgcattagagaaaagaatgaatgatttagtatt 184  Q
     | || || | ||||||| |||||||||||||||    
T  47078122 gtacactacaaaaaagaaagaatgatttagtatt 47078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 20251523 - 20251402
Alignment:
Q  68 gaatccttgacgtgacttgcacattcacaccaatcatatggattaatggtagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaaga 167  Q
    ||||| |||| ||| |||| ||||||||| |||   ||| ||| |||| ||||||||| |||||||||||||||||||||||| |||| || ||||||||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  168 atgaatgatttagtattatttt 189  Q
    |  |||||||||||||| ||||    
T  20251423 aataatgatttagtattttttt 20251402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 24129395 - 24129497
Alignment:
Q  117 tagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttagtattattttcagcggaattttgactcataataatgt 216  Q
    ||||||||| ||||||||| |||||||||||  | |||| |||||||||||| ||| ||||||||||||||||   |||||||| |||||| || |||||    
T  24129395 tagtttacataataaagttatgtcaatttcttccgtgcactagagaaaagaaagaaagatttagtattatttttgacggaatttagactcacaaaaatgt 24129494  T
Q  217 gat 219  Q
    |||    
T  24129495 gat 24129497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 25328623 - 25328686
Alignment:
Q  117 tagtttacaaaataaagttctgtcaatttctctcatgcattagagaaaagaatgaatgatttag 180  Q
    |||||||||||||||| |||| |||||| ||||  |||||||||||||||||  ||||||||||    
T  25328623 tagtttacaaaataaatttctctcaattactctactgcattagagaaaagaagaaatgatttag 25328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University