View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_high_28 (Length: 295)

Name: NF20235_high_28
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_high_28
NF20235_high_28
[»] chr1 (1 HSPs)
chr1 (1-295)||(7340267-7340560)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 7340267 - 7340560
Alignment:
Q  1 aattcatcacctataaaaagtacatcaattggacacatttaactctaacacactagctagctactatnnnnnnnnnctactacgtgtatacatttaccta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  7340267 aattcatcacctataaaaagtacatcaattggacacatttaactctaacacactagctagctactataaaaaaaa-ctactacgtgtatacatttaccta 7340365  T
Q  101 acctttcttccacttttgaaaaatcttttcttctcttgagnnnnnnnnnnnnnnnnnnnnnnnntaaggatataacataaatatggcctatgattaagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||                        |||||||||| |||||||||||||||||||||||||    
T  7340366 acctttcttccacttttgaaaaatcttttcttctcttgagaaaaaaggaaaagaaaagccaaaataaggatataccataaatatggcctatgattaagtc 7340465  T
Q  201 acatgggagcaaaatcttaaaaccccacaagacaagggtatcatgaacctacaagagaacagacacccatatagaagataaaatttgtcgtgtgg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7340466 acatgggagcaaaatcttaaaaccccacaagacaagggtatcatgaacctacaagagaacagacacccatatagaagataaaatttgtcgtgtgg 7340560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University