View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_3 (Length: 535)
Name: NF20235_high_3
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 81 - 518
Target Start/End: Complemental strand, 8403703 - 8403266
Alignment:
| Q |
81 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
180 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403703 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
8403604 |
T |
|
| Q |
181 |
tgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgttccgtatagtttcctttttcaataatcc |
280 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403603 |
tgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgttccgtatagtttcctttttcaataatcc |
8403504 |
T |
|
| Q |
281 |
tatcaaaaagttcaccacctttacaaacctccatcaccaaatacacattctgtttatcctcataaggtcctctgaattcaactatattcggttgccccga |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8403503 |
tatcaaaaagttcaccacctttacaaacctccatcaccaaatacacattctgtttatcctcataagctcctctgaattcaactatattcggttgccccga |
8403404 |
T |
|
| Q |
381 |
aagatgttgcagtatcataacctctcttcttacatcatctatctcttgctcgcttaatagtttcgctcttgatatcgatttgcaagcatattctcttcca |
480 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403403 |
aagatgttgcagaatcataacctctcttcttacatcatctatctcttgctcgcttaatagtttcgctcttgatatcgatttgcaagcatattctcttcca |
8403304 |
T |
|
| Q |
481 |
gttgttttctctgtgcatagatatgtcacacctgattg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
8403303 |
gttgttttctctgtgcatagatatgtcacacctgattg |
8403266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 8405088 - 8404966
Alignment:
| Q |
105 |
tccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgacac |
204 |
Q |
| |
|
|||||||||||| ||||| | || ||| || | |||||| ||||||||||||||||||||||||||| || | |||||| || |||||||||||||| |
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| T |
8405088 |
tccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaa |
8404989 |
T |
|
| Q |
205 |
acatgcaccacattcacaatctg |
227 |
Q |
| |
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|||| |||||||||| |||||| |
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| T |
8404988 |
gcatgaaccacattcataatctg |
8404966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 20501601 - 20501382
Alignment:
| Q |
80 |
taccttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacg |
179 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||| |||| | ||||| |||||||| ||| | |||||||||||| || || ||||| | |
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| T |
20501601 |
taccttcttcaatgaaaacagacaaaccaaaatcagtagccttaagaagtgcattttcatctttactagccaacaagaaattctctggtttcagatccct |
20501502 |
T |
|
| Q |
180 |
atgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgttccgtatagtttcctttttcaataatc |
279 |
Q |
| |
|
||||||||| |||||||||||||| | || || ||||| ||||||||||| ||||| |||||| | ||| |||| | |||||| |||| ||| |
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| T |
20501501 |
atgcataactcccataaaatgacaaatattaacaacattaacaatctgtctacaaatagaagcagcagctttttcactataatgtcctttagcaatgatc |
20501402 |
T |
|
| Q |
280 |
ctatcaaaaagttcaccacc |
299 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
20501401 |
ctatcaaaaagttcaccacc |
20501382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 55168322 - 55168269
Alignment:
| Q |
150 |
aagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgaca |
203 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||| |||||||||||||||||| |
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|
| T |
55168322 |
aagcaagaaattctcaggcttcaaatcgcgatgcaaaacacccataaaatgaca |
55168269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 44509861 - 44509813
Alignment:
| Q |
157 |
aaattctcaggcttaagatcacgatgcataacacccataaaatgacaca |
205 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| |||||||| |
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|
| T |
44509861 |
aaattctccggcttaagatcccgatgcataacaccattaacatgacaca |
44509813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 39940237 - 39940199
Alignment:
| Q |
276 |
aatcctatcaaaaagttcaccacctttacaaacctccat |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |
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| T |
39940237 |
aatcctatcaaaaagttcaccaccttcacaaagctccat |
39940199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 40537173 - 40537027
Alignment:
| Q |
153 |
caagaaattctcaggcttaagatcacgatgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgt |
252 |
Q |
| |
|
||||||||| || ||||| | ||| | |||||| ||||||||||||||||| | ||| || ||||| ||||| ||||| | ||| | ||| || || | | |
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|
| T |
40537173 |
caagaaattttctggcttcaaatctctatgcatcacacccataaaatgacaaatatgaacaacattaacaatttgtctaaaaattgaagctgcatctctt |
40537074 |
T |
|
| Q |
253 |
tccgtatagtttcctttttcaataatcctatcaaaaagttcaccacc |
299 |
Q |
| |
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|| |||| || ||||| |||||||| ||||| ||||||||||||| |
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|
| T |
40537073 |
tcactatatttccctttggcaataatcgtatcataaagttcaccacc |
40537027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 43453461 - 43453429
Alignment:
| Q |
156 |
gaaattctcaggcttaagatcacgatgcataac |
188 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
43453461 |
gaaattttcaggcttaagatcacgatgcataac |
43453429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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