View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_34 (Length: 272)
Name: NF20235_high_34
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 41523920 - 41523666
Alignment:
| Q |
1 |
ttcttgacgatgagttcggaaatgacactgttgtggaggctgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactca |
100 |
Q |
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| T |
41523920 |
ttcttgacgatgagttcggaaatgacactgttgtggaggttgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactca |
41523821 |
T |
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| Q |
101 |
accgcagagcaaagggaacaaggatgtgcaaggttcatcatcaggtatatggaaattatgcatgcatatcttattcctataaagatatgcattttttaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41523820 |
accgcagagcaaagggaacaaggatgtgcaaggttcatcatcaggtatatggaaattatgcatgcatattttattcctataaagatatgcattttttaat |
41523721 |
T |
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| Q |
201 |
gttacttgataaatattaaatttatgtgtgatcggatatatgttagatcagattg |
255 |
Q |
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| T |
41523720 |
gttacttgataaatattgaatttatgtgtgatcagataaatgttagatcagattg |
41523666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 41514969 - 41514715
Alignment:
| Q |
1 |
ttcttgacgatgagttcggaaatgacactgttgtggaggctgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactca |
100 |
Q |
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| T |
41514969 |
ttcttgacgatgagttagaaaatgacactgttgaggaggctgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactca |
41514870 |
T |
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| Q |
101 |
accgcagagcaaagggaacaaggatgtgcaaggttcatcatcaggtatatggaaattatgcatgcatatcttattcctataaagatatgcattttttaat |
200 |
Q |
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| T |
41514869 |
accgcagagcaaagggaacaaggatgtgcaaggttcatcatcaggtatatggaaactatgaatgcatctcttattcctataaagatatgcattttttaat |
41514770 |
T |
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| Q |
201 |
gttacttgataaatattaaatttatgtgtgatcggatatatgttagatcagattg |
255 |
Q |
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| T |
41514769 |
gttacttgataaatattgaatttatgtgtgatcggataaatgtttgatcagattg |
41514715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 41469208 - 41469011
Alignment:
| Q |
36 |
gaggctgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactcaaccgcagagcaaagggaacaaggatgtgcaaggt- |
134 |
Q |
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| T |
41469208 |
gaggctgctcctttaccaagaaatgaagatgatcatcacacccttggagttgctgctagtactcagccaccgagcaaagggagcaaggatgctcaaggtg |
41469109 |
T |
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| Q |
135 |
--tcatcatcaggtatatggaaattatgcatgca--------tatcttattcctataaagatatgcattttttaatgttacttgataaatattaaatt |
222 |
Q |
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| T |
41469108 |
catcatcatcaggtatatcgaaattatgcatgcatctattattctattattcctatgtagttatgcattttttaatattactttataaatattgaatt |
41469011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 41503425 - 41503249
Alignment:
| Q |
19 |
gaaatgacactgttgtggaggctgctcctttacagacaaatgaagatgctaatcacactcttggagttgctgctagtactcaaccgcagagcaaagggaa |
118 |
Q |
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| T |
41503425 |
gaaatgacattgttgaggaggctgctcctttgcaaagaaatgaagctgttcatcaaactcttggagtttctgccagcactcagccacaaagcaaagggag |
41503326 |
T |
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| Q |
119 |
caaggatgtgcaaggttcatcatcaggtatatggaaattatgcatgcatatcttattcctataaagatatgcatttttt |
197 |
Q |
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| T |
41503325 |
caaggacgctcaaggtgcatcatctgg--tatggaaattgtgcatgcatctcttattataataaagatatgcaattttt |
41503249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 41703283 - 41703312
Alignment:
| Q |
135 |
tcatcatcaggtatatggaaattatgcatg |
164 |
Q |
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| T |
41703283 |
tcatcatcaggtatatggaaattatgcatg |
41703312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 33079303 - 33079263
Alignment:
| Q |
153 |
aaattatgcatgcatatctta-ttcctataaagatatgcat |
192 |
Q |
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| T |
33079303 |
aaattatgcatacatatcttaattcctataaagatatgcat |
33079263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 41518968 - 41518907
Alignment:
| Q |
130 |
aaggttcatcatcaggtatatggaaattatgcatgcatatctta-ttcctataaagatatgcat |
192 |
Q |
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| T |
41518968 |
aaggtgcatcatcaggtatat--aaattatgcttacatttcttaattcctataaagatatgcat |
41518907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 41703231 - 41703271
Alignment:
| Q |
56 |
aaatgaagatgctaatcacactcttggagttgctgctagta |
96 |
Q |
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| T |
41703231 |
aaatgaagatgcctatcacactcttggagttgctggtagta |
41703271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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