View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_37 (Length: 266)
Name: NF20235_high_37
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 56388060 - 56387805
Alignment:
| Q |
1 |
caagatattctaattcgtgaaacgctgcgtatcagtgctgaattagcctcatcatctacaccccttctcccttcagatactaacttcatcggcagcagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
56388060 |
caagatattctaattcgtgaaacgctgcgtatcagtgctgaattagcctcatcatctacaccccttctcccttcagatactaccttcatcggcagcagca |
56387961 |
T |
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| Q |
101 |
gattcatctgctgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctcag |
200 |
Q |
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| T |
56387960 |
gattcatctgttgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctcag |
56387861 |
T |
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| Q |
201 |
tttacaaacccctaaacctcctcttgatgaattcgtctccttcgttagatcctatg |
256 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
56387860 |
tttacaaacacctaaacctcctcttgatgaattcatctccttcgttagatcctatg |
56387805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 29732705 - 29732836
Alignment:
| Q |
100 |
agattcatctgctgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctca |
199 |
Q |
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| T |
29732705 |
agattcatctgctgcgaggaaatcgatggccgtcgatggaattacgtggcagagaccaatgcctccgggcaattcaagaataattcctttcgctctctca |
29732804 |
T |
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| Q |
200 |
gtttacaaacccctaaacctcctcttgatgaa |
231 |
Q |
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| T |
29732805 |
gcttacaaaccccaaagcctcctcttgatgaa |
29732836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29732612 - 29732649
Alignment:
| Q |
1 |
caagatattctaattcgtgaaacgctgcgtatcagtgc |
38 |
Q |
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| T |
29732612 |
caagatattctaatccgcgaaacgctgcgtatcagtgc |
29732649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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