View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_high_38 (Length: 258)

Name: NF20235_high_38
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_high_38
NF20235_high_38
[»] chr6 (19 HSPs)
chr6 (1-158)||(14623208-14623365)
chr6 (1-156)||(14589550-14589705)
chr6 (1-126)||(33123018-33123143)
chr6 (4-127)||(26388201-26388324)
chr6 (187-244)||(14623400-14623457)
chr6 (23-127)||(29938623-29938726)
chr6 (5-123)||(7632781-7632899)
chr6 (8-126)||(3989524-3989642)
chr6 (5-120)||(3989524-3989639)
chr6 (1-128)||(7632776-7632903)
chr6 (5-123)||(14623212-14623330)
chr6 (5-123)||(33123022-33123140)
chr6 (5-114)||(29938627-29938735)
chr6 (79-139)||(10405046-10405106)
chr6 (5-123)||(26388202-26388320)
chr6 (187-244)||(14589742-14589798)
chr6 (5-123)||(14589554-14589672)
chr6 (79-128)||(23767941-23767990)
chr6 (83-127)||(30629598-30629642)
[»] chr4 (35 HSPs)
chr4 (5-127)||(22720517-22720639)
chr4 (5-127)||(52673609-52673731)
chr4 (5-127)||(22720513-22720635)
chr4 (5-127)||(22768155-22768277)
chr4 (5-140)||(52673592-52673727)
chr4 (15-125)||(41622106-41622216)
chr4 (8-127)||(22768151-22768270)
chr4 (5-127)||(49083049-49083166)
chr4 (79-127)||(2198055-2198103)
chr4 (5-57)||(2198059-2198111)
chr4 (5-127)||(44626173-44626293)
chr4 (15-128)||(6464885-6464998)
chr4 (5-127)||(49083053-49083170)
chr4 (79-127)||(22923666-22923714)
chr4 (79-127)||(22928319-22928367)
chr4 (79-127)||(22984598-22984646)
chr4 (79-127)||(22998186-22998234)
chr4 (25-121)||(41622128-41622224)
chr4 (79-128)||(15794769-15794819)
chr4 (79-128)||(2198121-2198169)
chr4 (5-53)||(22923670-22923718)
chr4 (5-53)||(22928323-22928371)
chr4 (5-53)||(22984602-22984650)
chr4 (5-53)||(22998190-22998238)
chr4 (11-52)||(2198118-2198159)
chr4 (90-127)||(5281231-5281268)
chr4 (1-54)||(6464886-6464939)
chr4 (79-128)||(39396827-39396876)
chr4 (84-133)||(39897110-39897159)
chr4 (86-127)||(44156092-44156133)
chr4 (90-139)||(50485791-50485840)
chr4 (80-128)||(6131436-6131484)
chr4 (5-72)||(15794774-15794842)
chr4 (84-140)||(22020110-22020166)
chr4 (1-53)||(52299085-52299136)
[»] chr5 (18 HSPs)
chr5 (5-126)||(26221035-26221156)
chr5 (4-127)||(21032539-21032662)
chr5 (7-127)||(42364233-42364353)
chr5 (5-128)||(29486504-29486627)
chr5 (25-127)||(5240233-5240335)
chr5 (5-128)||(29486509-29486632)
chr5 (1-128)||(7604194-7604322)
chr5 (5-105)||(21032543-21032643)
chr5 (5-127)||(42364227-42364349)
chr5 (8-123)||(26221035-26221150)
chr5 (79-125)||(892560-892606)
chr5 (5-103)||(5240237-5240335)
chr5 (5-53)||(892562-892610)
chr5 (79-123)||(6834041-6834085)
chr5 (90-128)||(35969225-35969263)
chr5 (84-128)||(1098634-1098678)
chr5 (1-53)||(6834037-6834089)
chr5 (84-128)||(36864512-36864556)
[»] chr8 (13 HSPs)
chr8 (1-127)||(6197833-6197959)
chr8 (1-113)||(13325116-13325224)
chr8 (5-123)||(6197837-6197955)
chr8 (1-127)||(27938998-27939124)
chr8 (5-128)||(11322569-11322690)
chr8 (15-123)||(13325116-13325220)
chr8 (21-128)||(11322589-11322695)
chr8 (11-53)||(158444-158486)
chr8 (79-113)||(158448-158482)
chr8 (79-125)||(1214021-1214067)
chr8 (5-53)||(28205809-28205857)
chr8 (79-127)||(43140553-43140601)
chr8 (1-53)||(43140629-43140680)
[»] chr7 (25 HSPs)
chr7 (5-123)||(4132397-4132516)
chr7 (1-123)||(4132397-4132520)
chr7 (5-142)||(38646177-38646315)
chr7 (1-142)||(41115557-41115698)
chr7 (79-127)||(26982771-26982819)
chr7 (79-140)||(45578005-45578066)
chr7 (5-53)||(26982775-26982823)
chr7 (79-127)||(43250424-43250472)
chr7 (5-56)||(43250417-43250468)
chr7 (79-125)||(38646175-38646221)
chr7 (85-127)||(43250376-43250418)
chr7 (79-127)||(21857076-21857124)
chr7 (5-43)||(43250380-43250418)
chr7 (5-55)||(45578022-45578072)
chr7 (79-128)||(24155642-24155691)
chr7 (5-46)||(38646255-38646296)
chr7 (5-122)||(41115562-41115679)
chr7 (79-127)||(21587842-21587890)
chr7 (5-53)||(21587846-21587894)
chr7 (5-53)||(21857080-21857128)
chr7 (79-127)||(21857171-21857219)
chr7 (84-128)||(30457820-30457864)
chr7 (8-68)||(34703509-34703569)
chr7 (1-53)||(34840621-34840673)
chr7 (8-68)||(40416972-40417032)
[»] chr1 (13 HSPs)
chr1 (1-140)||(8352129-8352268)
chr1 (5-123)||(8352146-8352264)
chr1 (5-119)||(26468305-26468419)
chr1 (6-120)||(31635757-31635871)
chr1 (5-92)||(14773765-14773852)
chr1 (8-127)||(31635752-31635871)
chr1 (5-123)||(43731130-43731248)
chr1 (9-127)||(26468301-26468419)
chr1 (3-125)||(43731128-43731250)
chr1 (59-127)||(30800186-30800254)
chr1 (25-103)||(897042-897120)
chr1 (79-128)||(39940571-39940620)
chr1 (84-128)||(10256787-10256831)
[»] chr3 (12 HSPs)
chr3 (5-127)||(50334932-50335053)
chr3 (5-105)||(35239682-35239782)
chr3 (23-125)||(29497369-29497471)
chr3 (5-123)||(50334932-50335049)
chr3 (9-107)||(32711221-32711319)
chr3 (5-105)||(29497371-29497471)
chr3 (23-127)||(35239682-35239786)
chr3 (1-132)||(53711868-53711998)
chr3 (90-124)||(42912351-42912385)
chr3 (5-38)||(42912352-42912385)
chr3 (79-128)||(53711867-53711916)
chr3 (25-105)||(48593175-48593255)
[»] chr2 (13 HSPs)
chr2 (5-95)||(8996792-8996882)
chr2 (25-128)||(8717540-8717643)
chr2 (79-127)||(10495729-10495777)
chr2 (79-127)||(43100756-43100804)
chr2 (66-128)||(8996729-8996791)
chr2 (33-127)||(8996792-8996886)
chr2 (5-127)||(20218557-20218679)
chr2 (3-127)||(13953774-13953899)
chr2 (3-127)||(14094981-14095106)
chr2 (5-53)||(10495725-10495773)
chr2 (35-110)||(39792136-39792211)
chr2 (5-46)||(43100760-43100801)
chr2 (5-53)||(8996734-8996782)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-38)||(33971-34008)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14623208 - 14623365
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  14623208 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaa 14623307  T
Q  101 aaagtgaagttttacttataatagtgatgagagtgagtatatgtttccctttcaacag 158  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  14623308 aaagtgaagttttatttataatagtgatgagagggagtatatgtttccctttcaacag 14623365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 14589550 - 14589705
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  14589550 tcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaa 14589649  T
Q  101 aaagtgaagttttacttataatagtgatgagagtgagtatatgtttccctttcaac 156  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  14589650 aaagtaaagttttatttataatagtgatgagagggagtataggtttccctttcaac 14589705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 33123018 - 33123143
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||| |||||| ||| |||| ||||||||| || |  ||||||||| | |||||||||    
T  33123018 tcattattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaa 33123117  T
Q  101 aaagtgaagttttacttataatagtg 126  Q
    ||||| || |||| ||||||||||||    
T  33123118 aaagtaaacttttgcttataatagtg 33123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 26388201 - 26388324
Alignment:
Q  4 ttattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaa 103  Q
    ||||||||| |||||||  |||||| ||||| ||||||||||| |||||| ||  ||||||||||||||| | | |||||||||||||| ||| ||||||    
T  26388201 ttattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaa 26388300  T
Q  104 gtgaagttttacttataatagtga 127  Q
    ||| |||||| |||||||||||||    
T  26388301 gtggagtttttcttataatagtga 26388324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 14623400 - 14623457
Alignment:
Q  187 gcaataataatccatgtgatgttgatgccagtagttcattgactaaagtttgcctttg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623400 gcaataataatccatgtgatgttgatgccagtagttcattgactaaagtttgcctttg 14623457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 29938726 - 29938623
Alignment:
Q  23 acttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataat 122  Q
    |||||| ||||||||||||||||| |||||| ||| ||||||| || ||| || | |||||||||| ||||||||||||||||||| |||||||||||||    
T  29938726 actttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaattttacttataat 29938628  T
Q  123 agtga 127  Q
    |||||    
T  29938627 agtga 29938623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 7632781 - 7632899
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||||||||||||  |  |||||| ||||||  |||||| ||| ||||||||||||| ||| | |||||||||||| |||||||||||||    
T  7632781 tattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaag 7632880  T
Q  105 tgaagttttacttataata 123  Q
    | |||||||  ||||||||    
T  7632881 ttaagttttgtttataata 7632899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 3989524 - 3989642
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtga 107  Q
    ||||||||||||||||||||| | ||||||  ||||||  |||| | ||| |||||||||||||| || | || ||||||||||||||||| || ||| |    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagtta 3989623  T
Q  108 agttttacttataatagtg 126  Q
    ||||||  |||||||||||    
T  3989624 agttttgattataatagtg 3989642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 3989639 - 3989524
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| |||||||| ||| || ||||||||||||||||| |||||| ||| || || || ||||| || | ||| ||||||  |||||| |||||||    
T  3989639 tattataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattattttatgtatttaaaaag 3989540  T
Q  105 tgaagttttacttata 120  Q
    ||||||||| ||||||    
T  3989539 tgaagttttgcttata 3989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7632903 - 7632776
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||| ||||||   | || || || ||||| || | ||| |||||| ||||||  ||     
T  7632903 tcattattataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgtagttag 7632804  T
Q  101 aaagtgaagttttacttataatagtgat 128  Q
    |||||||||||||  |||||||||||||    
T  7632803 aaagtgaagttttgtttataatagtgat 7632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 14623330 - 14623212
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||  |||||||||||||| |||||||||||| |||| || | |  || || || || ||| | || | || ||||||||||||||||| |||||    
T  14623330 tattataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaagattagatacatgaattattcaatgtatctgaaaag 14623231  T
Q  105 tgaagttttacttataata 123  Q
    ||||||||| |||||||||    
T  14623230 tgaagttttgcttataata 14623212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 33123140 - 33123022
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| || |||||| ||||||| | ||||||| | ||||  || || ||  | ||||| || | |||||||||||||||||| |||||||    
T  33123140 tattataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaaaag 33123041  T
Q  105 tgaagttttacttataata 123  Q
    |||||||||  ||||||||    
T  33123040 tgaagttttgtttataata 33123022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 29938627 - 29938735
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||| |||| ||||||||| ||||||||| ||||||| |||||| |||  |  | || ||||| || | ||||||||||||||||||||||||||    
T  29938627 tattataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaag 29938725  T
Q  105 tgaagtttta 114  Q
    |  |||||||    
T  29938726 tagagtttta 29938735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 10405106 - 10405046
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgatgagagtgagta 139  Q
    |||||||||| ||||||| |||||| |||||||||| ||||||||||||| |||| |||||    
T  10405106 attaattatttaatgtatttaaaaaatgaagttttatttataatagtgatcagagagagta 10405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 26388320 - 26388202
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||| |||||| ||||||| | ||| ||||||||||| ||||||  || || || || ||| | || | |||||||||||||| |||||||||||    
T  26388320 tattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatctaaaaag 26388221  T
Q  105 tgaagttttacttataata 123  Q
    |  ||||||  ||||||||    
T  26388220 tagagttttgtttataata 26388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 14589742 - 14589798
Alignment:
Q  187 gcaataataatccatgtgatgttgatgccagtagttcattgactaaagtttgcctttg 244  Q
    |||||||||||| |||||||||||||||||||  ||||||||| | ||||||||||||    
T  14589742 gcaataataatc-atgtgatgttgatgccagtgattcattgacaagagtttgcctttg 14589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 14589672 - 14589554
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||  ||||||| |||||| ||||||||||||||||  || | |   | || || || ||||| || | || ||||||||||||||||| |||||    
T  14589672 tattataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatctgaaaag 14589573  T
Q  105 tgaagttttacttataata 123  Q
    |||||||||  ||||||||    
T  14589572 tgaagttttgtttataata 14589554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 23767990 - 23767941
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||| ||||    
T  23767990 attaattatttaatgtatcgaaaaactgaaattttacttataatattgat 23767941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 30629642 - 30629598
Alignment:
Q  83 attattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||||    
T  30629642 attattcaatctatctaaaaagtgaaattttgtttataatagtga 30629598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 22720517 - 22720639
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||| | ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| | | ||||||||||||||||||||||||||    
T  22720517 tattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaaaaag 22720616  T
Q  105 tgaagttttacttataatagtga 127  Q
    || |||||| |||||||||||||    
T  22720617 tggagttttgcttataatagtga 22720639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 52673609 - 52673731
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||||| |||||| ||||| ||||||||||| |||||| |||  ||||||||||  |||| | ||||||||||||||||||||||||||    
T  52673609 tattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattattcaatgtatctaaaaag 52673708  T
Q  105 tgaagttttacttataatagtga 127  Q
    |||| |||| |||||||||||||    
T  52673709 tgaaattttgcttataatagtga 52673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 22720635 - 22720513
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||||||  || || || || ||||| || | ||||||||||||||||||||||||||    
T  22720635 tattataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaaaaag 22720536  T
Q  105 tgaagttttacttataatagtga 127  Q
    || | ||||  ||||||||||||    
T  22720535 tggaattttgtttataatagtga 22720513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 22768155 - 22768277
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||||| ||  ||| ||||||||||||||||| |||||| ||| ||||||||||||||| |   ||||||||||||||||||||||||||    
T  22768155 tattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaaaaag 22768254  T
Q  105 tgaagttttacttataatagtga 127  Q
    || ||| ||  ||||| ||||||    
T  22768255 tgtagtgttgtttatagtagtga 22768277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 52673727 - 52673592
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||  |  || || || | ||| || | |||||||||||||| |||||||||||    
T  52673727 tattataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatctaaaaag 52673628  T
Q  105 tgaagttttacttataatagtgatgagagtgagtat 140  Q
    | ||||||| ||||||||||||| | ||| ||||||    
T  52673627 taaagttttgcttataatagtgacgggagggagtat 52673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 41622216 - 41622106
Alignment:
Q  15 aaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagtttta 114  Q
    |||| ||||||||| ||||||||||||| ||| |||||| ||| ||||||||||||||    | | ||||||||||||||||||||||| |  | |||||    
T  41622216 aaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaaatagattttta 41622117  T
Q  115 cttataatagt 125  Q
    |||||||||||    
T  41622116 cttataatagt 41622106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 22768270 - 22768151
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtga 107  Q
    ||||| ||| ||| ||||||| ||||||||||||||||| ||| ||  || || || || ||||| || | ||||||||||||||||||||||||  ||     
T  22768270 tataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaaaatatgg 22768171  T
Q  108 agttttacttataatagtga 127  Q
    |||||| |||||||||||||    
T  22768170 agttttgcttataatagtga 22768151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 49083166 - 49083049
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||| |||||  ||  ||||||||    || || | ||||||||||||||| |||||||||     
T  49083166 tattataagcaaaatttcacattttagatacattaaataattaatgtaactaatctttatta----ctagatacattaattattcaatgcatctaaaaa- 49083072  T
Q  105 tgaagttttacttataatagtga 127  Q
    ||||||||| |||||||||||||    
T  49083071 tgaagttttgcttataatagtga 49083049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 2198103 - 2198055
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2198103 attaattattcaatgtatctaaaaagtggagttttgcttataatagtga 2198055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 2198059 - 2198111
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatag 57  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  2198059 tattataagcaaaactccactttttagatacattgaataattaatgtatatag 2198111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 44626173 - 44626293
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||| || | |||||||||||||||||||| | |||||| ||| || |||||||  |   | | |||||||||||| | ||| | |||||    
T  44626173 tattataatcaaaattttatttttcagatacattgaataactaatgtatctagtctatattataacca--aaaaattaattattcagtatatttgaaaag 44626270  T
Q  105 tgaagttttacttataatagtga 127  Q
    |||||||||||||||||||||||    
T  44626271 tgaagttttacttataatagtga 44626293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 6464998 - 6464885
Alignment:
Q  15 aaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagtttta 114  Q
    |||||||||||||| | |||| |||||||||| |||||| |||   ||||||||   || | | |||||||||||||||||| | |||||| ||||||||    
T  6464998 aaaacttcacttttaaaataccttgaataattaatgtatctagttattattataacatgtatacattaattattcaatgtattttaaaagtaaagtttta 6464899  T
Q  115 cttataatagtgat 128  Q
    ||||| ||| ||||    
T  6464898 cttatcataatgat 6464885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 49083053 - 49083170
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||||||| |||| |||| |||||||||||| |||||| |||    || || ||| | |  | |||||||||| ||||||||||||| |    
T  49083053 tattataagcaaaacttcattttt-agatgcattgaataattaatgtatctag----taataaagattagttacattaattatttaatgtatctaaaatg 49083147  T
Q  105 tgaagttttacttataatagtga 127  Q
    |||| |||| |||||||||||||    
T  49083148 tgaaattttgcttataatagtga 49083170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 22923714 - 22923666
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||    
T  22923714 attaattattcaatgtatctaaaaattggagttttgcttataatagtga 22923666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 22928367 - 22928319
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||    
T  22928367 attaattattcaatgtatctaaaaattggagttttgcttataatagtga 22928319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 22984646 - 22984598
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||    
T  22984646 attaattattcaatgtatctaaaaattggagttttgcttataatagtga 22984598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 22998234 - 22998186
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||    
T  22998234 attaattattcaatgtatctaaaaattggagttttgcttataatagtga 22998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 41622128 - 41622224
Alignment:
Q  25 ttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataa 121  Q
    |||| |||||||||||||||||  ||||  ||| || || || ||||| || | |||||| ||||||||||||||||||||||| ||||| ||||||    
T  41622128 tttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaaagtgaacttttatttataa 41622224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 15794819 - 15794769
Alignment:
Q  79 attaattattcaatgtatctaaaa-agtgaagttttacttataatagtgat 128  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  15794819 attaattattcaatgtatctaaaacaatgaaattttacttataatagtgat 15794769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 2198121 - 2198169
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  2198121 attaattattcaatgtatttaaaaagtgaagttttgctt-taatagtgat 2198169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22923670 - 22923718
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  22923670 tattataagcaaaactccaatttttagatacattgaataattaatgtat 22923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22928323 - 22928371
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  22928323 tattataagcaaaactccaatttttagatacattgaataattaatgtat 22928371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22984602 - 22984650
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  22984602 tattataagcaaaactccaatttttagatacattgaataattaatgtat 22984650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22998190 - 22998238
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  22998190 tattataagcaaaactccaatttttagatacattgaataattaatgtat 22998238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 2198159 - 2198118
Alignment:
Q  11 aagcaaaacttcacttttcagatacattgaataattcatgta 52  Q
    |||||||||||||||||| | ||||||||||||||| |||||    
T  2198159 aagcaaaacttcactttttaaatacattgaataattaatgta 2198118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 5281231 - 5281268
Alignment:
Q  90 aatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  5281231 aatgtatctaaaaagtgaatttttacttatattagtga 5281268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6464886 - 6464939
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtata 54  Q
    ||||||| ||||| ||||||| |||||| | ||||||||||||||| |||||||    
T  6464886 tcattatgataagtaaaactttacttttaaaatacattgaataattaatgtata 6464939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 39396876 - 39396827
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||||||| | |||||| ||||||||||||||||  |||||||||||||    
T  39396876 attaattatcccatgtatttaaaaagtgaagttttgtttataatagtgat 39396827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 39897159 - 39897110
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgatgagag 133  Q
    |||||||||| |||||||||||||  |||||||| ||||||||| |||||    
T  39897159 ttattcaatgaatctaaaaagtgattttttacttctaatagtgacgagag 39897110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 44156092 - 44156133
Alignment:
Q  86 attcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||| |||| |||||| ||||||    
T  44156092 attcaatgtatctaaaaagtgaatttttgcttatattagtga 44156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 50485791 - 50485840
Alignment:
Q  90 aatgtatctaaaaagtgaagttttacttataatagtgatgagagtgagta 139  Q
    ||||||||||||||||||| |||   ||||||||||||||||| ||||||    
T  50485791 aatgtatctaaaaagtgaaatttagtttataatagtgatgagattgagta 50485840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 6131484 - 6131436
Alignment:
Q  80 ttaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||||||    
T  6131484 ttaattatttaatgtatttaaaaagtaaagttttgattataatagtgat 6131436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 15794774 - 15794842
Alignment:
Q  5 tattataagcaaaacttcact-tttcagatacattgaataattcatgtatatagcctttattatagact 72  Q
    ||||||||| |||| |||| | ||| ||||||||||||||||| |||||| | | ||||||||||||||    
T  15794774 tattataagtaaaatttcattgttttagatacattgaataattaatgtatctggtctttattatagact 15794842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 22020166 - 22020110
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgatgagagtgagtat 140  Q
    ||||| |||| |||||||||||||| |||| |||||||||||||  |||| ||||||    
T  22020166 ttattgaatgaatctaaaaagtgaacttttgcttataatagtgaccagagggagtat 22020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52299085 - 52299136
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||||| || |||||| | ||||||||||||||| ||||||    
T  52299085 tcattattataagcaaaattttacttttta-atacattgaataattaatgtat 52299136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 26221035 - 26221156
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| |||||||| |||||| ||||||||||||||||| |||||| |||  |||||||||||  | | | |||||||||||| |||||||||||||    
T  26221035 tattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcagtgtatctaaaaag 26221134  T
Q  105 tgaagttttacttataatagtg 126  Q
    |||||||||||||||| |||||    
T  26221135 tgaagttttacttatattagtg 26221156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 21032662 - 21032539
Alignment:
Q  4 ttattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaa 103  Q
    ||||||||| ||||| |  |||||| ||||| ||||||||||| |||||| ||| ||||||||||||||| | | |||||||||||||||||| ||||||    
T  21032662 ttattataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaa 21032563  T
Q  104 gtgaagttttacttataatagtga 127  Q
    ||| |||||| |||||||||||||    
T  21032562 gtggagttttgcttataatagtga 21032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 42364233 - 42364353
Alignment:
Q  7 ttataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtg 106  Q
    |||||| ||||| || |||||| | ||||||||||||||| |||||| ||| |||||||||| ||| || |   ||||||||||||||||||||||||||    
T  42364233 ttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaaaaagtg 42364332  T
Q  107 aagttttacttataatagtga 127  Q
    ||||||| |||||||||||||    
T  42364333 aagttttgcttataatagtga 42364353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 29486627 - 29486504
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||  | |||||| ||||||||||||||||| || ||| ||| |||||| ||| ||| || | |||||||||||||||||||||||| |    
T  29486627 tattataagcaaaatctgactttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatg 29486528  T
Q  105 tgaagttttacttataatagtgat 128  Q
    |||| |||| ||||||||||||||    
T  29486527 tgaaattttgcttataatagtgat 29486504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 5240335 - 5240233
Alignment:
Q  25 ttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataatag 124  Q
    |||| ||||||||||||||||| |||||| ||  |||||||||| ||| || | ||||||||||||||||||||||||| | || |||| ||||||||||    
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  125 tga 127  Q
    |||    
T  5240235 tga 5240233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 29486509 - 29486632
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| ||||| ||| ||||||||||||||||| |||||| |||  | |  || |||||  | | ||||||||||||||||||||||||||    
T  29486509 tattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgtatctaaaaag 29486608  T
Q  105 tgaagttttacttataatagtgat 128  Q
    | |  |||| ||||||||||||||    
T  29486609 tcagattttgcttataatagtgat 29486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7604322 - 7604194
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataa-ttcatgtatatagcctttattatagactggacagattaattattcaatgtatcta 99  Q
    ||||||||||||| |||| || |||||| ||||| | ||||||| || ||| || ||| |||||||||||||| ||   |||| ||||||| | ||||||    
T  7604322 tcattattataagtaaaatttgactttttagatatactgaataaattaatggatttagtctttattatagacttgatgcattacttattcagtatatcta 7604223  T
Q  100 aaaagtgaagttttacttataatagtgat 128  Q
    ||||||||| |||| ||||||||||||||    
T  7604222 aaaagtgaaattttgcttataatagtgat 7604194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 21032543 - 21032643
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||||| ||||||| | ||||||||||||||| ||||||  || || || || ||||| || | |||||||||||||| |||||||||||    
T  21032543 tattataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaaaaag 21032642  T
Q  105 t 105  Q
    |    
T  21032643 t 21032643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 42364349 - 42364227
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||||||||||||| |||||||||||||||||   |||| |||  | || || |||||  | | |||||||||||||||||| |||||||    
T  42364349 tattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtatttaaaaag 42364250  T
Q  105 tgaagttttacttataatagtga 127  Q
    | || ||||  |||||| |||||    
T  42364249 taaatttttgtttataacagtga 42364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 26221150 - 26221035
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtga 107  Q
    |||||| |||||||||||||| ||||||| ||||||||| || ||||    || || || | ||| || | ||||||||||||||||||||||||||| |    
T  26221150 tataagtaaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaaaagtaa 26221051  T
Q  108 agttttacttataata 123  Q
    ||||||  ||||||||    
T  26221050 agttttgtttataata 26221035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 892606 - 892560
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagt 125  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||    
T  892606 attaattattcaatgaatctaaaaagtgaatttttgcttataatagt 892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 5240237 - 5240335
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaa 103  Q
    |||||||||||||| || | |||| ||||||||||||||||| |||||| |||  | || || ||  | || | |||||||||||||||||||||||||    
T  5240237 tattataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaaaaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||| ||||||||| |||| |||||||||||| ||||||    
T  892562 tattataagcaaaaattcactttttagattcattgaataattaatgtat 892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 6834085 - 6834041
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataata 123  Q
    |||||||||||||| |||||||||||| || ||||||||||||||    
T  6834085 attaattattcaatatatctaaaaagtaaaattttacttataata 6834041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 35969225 - 35969263
Alignment:
Q  90 aatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  35969225 aatgtatctaaaaagtgaatttttacttatattagtgat 35969263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 1098678 - 1098634
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||| |||| ||||||||||| || |||||||||||||||||||    
T  1098678 ttattgaatgaatctaaaaagtcaacttttacttataatagtgat 1098634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6834037 - 6834089
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    ||||||||||||| |||| || |||||| ||||| ||||||||||| ||||||    
T  6834037 tcattattataagtaaaattttactttttagatatattgaataattaatgtat 6834089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 36864512 - 36864556
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||| |||| |||||||||||||| ||||| |||||||||||||    
T  36864512 ttattgaatgaatctaaaaagtgaacttttatttataatagtgat 36864556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 6197833 - 6197959
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| || |||||| ||| |||||| ||||| |  | | |||||||||| |||||||||||    
T  6197833 tcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaa 6197932  T
Q  101 aaagtgaagttttacttataatagtga 127  Q
    ||||| ||||||| |||||||||||||    
T  6197933 aaagtaaagttttgcttataatagtga 6197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13325224 - 13325116
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    ||||||||||||| |||||||||||||| || || ||||||||||  |||||| |||    ||||||| ||| || | ||||||||||||||||||||||    
T  13325224 tcattattataaggaaaacttcactttttaggtatattgaataatcaatgtatttag----tattataaactagatacattaattattcaatgtatctaa 13325129  T
Q  101 aaagtgaagtttt 113  Q
    ||| |||||||||    
T  13325128 aaattgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 6197955 - 6197837
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||||| |||||| ||||||||| ||||||| |||||| ||  || |  || ||||| || | ||||| |||| |||||||||||||||    
T  6197955 tattataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaaaaag 6197856  T
Q  105 tgaagttttacttataata 123  Q
    || |||||| |||||||||    
T  6197855 tggagttttgcttataata 6197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 27938998 - 27939124
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    ||||||| ||||| |||||| ||||||  |  | |||||||||||  |||||| ||| ||||||||||||||||  | ||| ||||||||||||||||||    
T  27938998 tcattatcataagtaaaactccactttataagtgcattgaataatcaatgtatctagtctttattatagactgggtacattcattattcaatgtatctaa 27939097  T
Q  101 aaagtgaagttttacttataatagtga 127  Q
    ||| | || ||||||| ||||||||||    
T  27939098 aaaataaaattttactcataatagtga 27939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 11322690 - 11322569
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||||| || |||| ||||| ||||||||||| || |||  |  ||||||||||||  ||| | ||||||||||||||| ||||||||||    
T  11322690 tattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattattcaatgcatctaaaaag 11322592  T
Q  105 tgaagttttacttataatagtgat 128  Q
    || | |||| ||||||| ||||||    
T  11322591 tg-actttttcttataacagtgat 11322569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 13325116 - 13325220
Alignment:
Q  15 aaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagtttta 114  Q
    ||||||||| |||| ||||||||||||||||| |||||| |||  ||||| |||  ||  | | ||| |||||||||| || |||||||||||||||||     
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctag--tttataata--ctaaatacattgattattcaatatacctaaaaagtgaagttttc 13325211  T
Q  115 cttataata 123  Q
    |||||||||    
T  13325212 cttataata 13325220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 11322589 - 11322695
Alignment:
Q  21 tcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttata 120  Q
    |||||||| |||| |||||||||||| ||||||     || || || ||| |||| | |||||||||||||| |||||||||| || |||||| ||||||    
T  11322589 tcactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatctaaaaattg-agttttgcttata 11322687  T
Q  121 atagtgat 128  Q
    ||||||||    
T  11322688 atagtgat 11322695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 158444 - 158486
Alignment:
Q  11 aagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||    
T  158444 aagcaaaatttcactttttagatacattgaataattaatgtat 158486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 158482 - 158448
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagtttt 113  Q
    |||||||||||||||||||||||||||||| ||||    
T  158482 attaattattcaatgtatctaaaaagtgaaatttt 158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 1214021 - 1214067
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagt 125  Q
    |||||||||||||| ||||||||||||  ||||||| ||||||||||    
T  1214021 attaattattcaatatatctaaaaagtagagttttatttataatagt 1214067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 28205809 - 28205857
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||| ||||| || | |||||||||||||||||||||| ||||||    
T  28205809 tattataaacaaaatttaatttttcagatacattgaataattaatgtat 28205857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 43140601 - 43140553
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||||||||||||||| |||| | |||||  ||||||||||||    
T  43140601 attaattattcaatgtatctaataagtaatgttttgtttataatagtga 43140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43140680 - 43140629
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||| ||||||    
T  43140680 tcattattataaacaaaacttcattttttagatac-ttgaataattaatgtat 43140629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 4132397 - 4132516
Alignment:
Q  5 tattataagcaaaacttcacttttc-agatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaa 103  Q
    |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||  |||||||||||||  | | ||||| |||||||||||||||||||    
T  4132397 tattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaa 4132496  T
Q  104 gtgaagttttacttataata 123  Q
    || |||||||  ||||||||    
T  4132497 gttaagttttgtttataata 4132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4132520 - 4132397
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatct-a 99  Q
    |||||||||||| |||||||| |||||| |||||||||||||| || |||||| ||| || || || | |||  | | |||||||||||||||||||| |    
T  4132520 tcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaa 4132421  T
Q  100 aaaagtgaagttttacttataata 123  Q
    ||||||||| |||| |||||||||    
T  4132420 aaaagtgaaattttgcttataata 4132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 38646177 - 38646315
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagatt-aattattcaatgtatctaaaaa 103  Q
    ||||||||| ||||||  |||||| ||||||||||||||||| || ||| ||   ||| |||||||| | | | ||| ||||||||||| |||||||| |    
T  38646177 tattataagtaaaactcaactttttagatacattgaataattaatatatttaatttttgttatagaccgaatacattaaattattcaatatatctaaata 38646276  T
Q  104 gtgaagttttacttataatagtgatgagagtgagtatat 142  Q
    |||||||||| |||||||||||||  |||| ||||||||    
T  38646277 gtgaagttttgcttataatagtgaccagagggagtatat 38646315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 41115557 - 41115698
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||| |||||||| ||||||  |||||  |||||||||||| |||| |||||| ||  |||||||||||| | || | |||||||||  ||||||| |||    
T  41115557 tcatcattataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatataa 41115656  T
Q  101 aaagtgaagttttacttataatagtgatgagagtgagtatat 142  Q
    ||| | ||||||||||||||||||| |  |||| ||||||||    
T  41115657 aaaattaagttttacttataatagttaccagagagagtatat 41115698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 26982819 - 26982771
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26982819 attaattattcaatgtatctaaaaagtgaagttttgcttataatagtga 26982771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 45578066 - 45578005
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgatgagagtgagtat 140  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  45578066 attaattgttcaatgtatctaaaaagtgaaattttacttataatagtgactagagagagtat 45578005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 26982775 - 26982823
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  26982775 tattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 43250424 - 43250472
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  43250424 attaattattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 43250468 - 43250417
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatata 56  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  43250468 tattataagcaaaactttactttttagatacattgaataattaatgtatata 43250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 38646221 - 38646175
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagt 125  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  38646221 attaattattcaatgtatctaaaaagttgagttttacttataatagt 38646175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 43250418 - 43250376
Alignment:
Q  85 tattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 21857124 - 21857076
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||||||||| |||||||||| || |||| |||||||||||||    
T  21857124 attaattattcaatgtgtctaaaaagtaaacttttgcttataatagtga 21857076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 43250380 - 43250418
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaata 43  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  43250380 tattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 45578022 - 45578072
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatat 55  Q
    ||||||||| |||| ||||||||| |||||||||||| |||| ||||||||    
T  45578022 tattataagtaaaatttcactttttagatacattgaacaattaatgtatat 45578072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 24155642 - 24155691
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    |||||||||| |||||||||||||| |||||||||  |||| ||||||||    
T  24155642 attaattatttaatgtatctaaaaattgaagttttgtttatgatagtgat 24155691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 38646296 - 38646255
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataatt 46  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  38646296 tattataagcaaaacttcactatttagatatattgaataatt 38646255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 41115679 - 41115562
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||| ||||||| | |||| | |||||||  |||||| |||||| ||  || || || ||| | || | ||||||| ||||||||||||| ||||    
T  41115679 tattataagtaaaacttaattttttatatacattacataattaatgtatctactctataataaagattagatacattaattgttcaatgtatctacaaag 41115580  T
Q  105 tgaagttttacttataat 122  Q
    |  |||||||||||||||    
T  41115579 tacagttttacttataat 41115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 21587890 - 21587842
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||| |||| ||||  ||||||||||||| |||||||||||||    
T  21587890 attaattatttaatgcatcttgaaagtgaagttttgcttataatagtga 21587842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 21587846 - 21587894
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||||||||||  |||| |||| ||||||| ||||||    
T  21587846 tattataagcaaaacttcactttcaagatgcattaaataattaatgtat 21587894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 21857080 - 21857128
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||| || |||||| ||| ||||||||||||| ||||||    
T  21857080 tattataagcaaaagtttactttttagacacattgaataattaatgtat 21857128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 21857171 - 21857219
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||||||| | |||||||| |||| |||| |||||||||||||    
T  21857171 attaattattcaatatgtctaaaaaatgaatttttgcttataatagtga 21857219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 30457820 - 30457864
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||| |||| || ||||||||||| |||||||||||||||||||    
T  30457820 ttattgaatgaatttaaaaagtgaacttttacttataatagtgat 30457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 34703569 - 34703509
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattata 68  Q
    ||||||||||| ||||||||| ||||||||| ||| | | |||||||| | ||||||||||    
T  34703569 tataagcaaaaattcactttttagatacattcaattaatgatgtatatggtctttattata 34703509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34840621 - 34840673
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||||||| ||||||||| |||| |||| ||||| | ||||||    
T  34840621 tcattattataagcaaaagttcactttttagattcattcaataaatgatgtat 34840673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 40417032 - 40416972
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattata 68  Q
    ||||||||||| ||||||||| ||||||||| ||| | | |||||||| | ||||||||||    
T  40417032 tataagcaaaaattcactttttagatacattcaattaatgatgtatatggtctttattata 40416972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8352268 - 8352129
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||  || || || | | | || | |||||| |||||||||||||||    
T  8352268 tcattattataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatctaa 8352169  T
Q  101 aaagtgaagttttacttataatagtgatgagagtgagtat 140  Q
    ||| ||||||||| |||||||||||||  |||| ||||||    
T  8352168 aaaatgaagttttgcttataatagtgaccagagggagtat 8352129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 8352146 - 8352264
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||| ||   ||||||||||| |  | | |||||||||||||| |||||||||||    
T  8352146 tattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattattcaatatatctaaaaag 8352245  T
Q  105 tgaagttttacttataata 123  Q
     |||||||| |||||||||    
T  8352246 ggaagttttgcttataata 8352264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 26468305 - 26468419
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||| ||||||||| | ||||||||||||||| |||||| ||   ||||||||||||   | | || |||||||||||||||  ||||||    
T  26468305 tattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattattcaatgtataaaaaaag 26468404  T
Q  105 tgaagttttacttat 119  Q
    |||| ||||||||||    
T  26468405 tgaaattttacttat 26468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 31635757 - 31635871
Alignment:
Q  6 attataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagt 105  Q
    |||| ||| |||||||||||||| | ||||||||||||||  ||||||   |   |||||||||||| || | |||| ||||||||||||||||||||||    
T  31635757 attacaagtaaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagt 31635856  T
Q  106 gaagttttacttata 120  Q
    ||| |||| ||||||    
T  31635857 gaaattttgcttata 31635871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 14773852 - 14773765
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaat 92  Q
    |||||||||||||| || |||||| ||||| |||| |||||| |||||| ||| || |||||||||||||| | | ||||||||||||    
T  14773852 tattataagcaaaatttaactttttagatatattgtataattaatgtatctagtctgtattatagactggatacaataattattcaat 14773765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 31635871 - 31635752
Alignment:
Q  8 tataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtga 107  Q
    ||||||||||| ||||||||| ||||||||||||||| | || ||| ||| || || ||   || | | | ||| |||||||||||||| ||||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtga 31635772  T
Q  108 agttttacttataatagtga 127  Q
    |||||||||| |||| ||||    
T  31635771 agttttacttgtaatggtga 31635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 43731130 - 43731248
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| || || | | ||||||||| ||||||| |||||| |||  ||||||| | | | || | ||||| |||||||||||||||||||     
T  43731130 tattataagcaaaaatttacatgtaagatacattcaataattaatgtatctagtttttattaaaaaatagatacattaactattcaatgtatctaaaaaa 43731229  T
Q  105 tgaagttttacttataata 123  Q
    |||| |||| |||||||||    
T  43731230 tgaaattttgcttataata 43731248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 26468419 - 26468301
Alignment:
Q  9 ataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaa 108  Q
    ||||| |||| |||||||||   ||||||||||||||| || ||||| | || || || | | | || | |||||||||||||||||| |||||||||||    
T  26468419 ataagtaaaatttcactttttttatacattgaataattgatatatatggtctataataaaaattagatacattaattattcaatgtatttaaaaagtgaa 26468320  T
Q  109 gttttacttataatagtga 127  Q
     ||||  ||||||||||||    
T  26468319 attttgtttataatagtga 26468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 43731250 - 43731128
Alignment:
Q  3 attattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaa 102  Q
    |||||||||||||||| |||| |||| |||||||||||||| || |||||| ||   |||| || | ||| || | |||||||||| ||||||||| | |    
T  43731250 attattataagcaaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgtatcttaca 43731151  T
Q  103 agtgaagttttacttataatagt 125  Q
     || || |||| |||||||||||    
T  43731150 tgtaaatttttgcttataatagt 43731128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 30800254 - 30800186
Alignment:
Q  59 ctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||| | |||||| |||||||||||||| ||||| || ||||  |||||| |||||    
T  30800254 ctttattatagactggatacattaatcattcaatgtatctagaaagtaaaattttgtttataagagtga 30800186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 897042 - 897120
Alignment:
Q  25 ttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaa 103  Q
    |||| ||||||||| ||||||| |||||| ||| ||| ||| || |  ||| | |||||||||||||||||||||||||    
T  897042 tttttagatacatttaataattaatgtatttagtcttcattgtaaatgggatacattaattattcaatgtatctaaaaa 897120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 39940571 - 39940620
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    |||| ||||| |||| ||||||||||| || |||||||||||||||||||    
T  39940571 attatttattgaatgaatctaaaaagtaaatttttacttataatagtgat 39940620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 10256831 - 10256787
Alignment:
Q  84 ttattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||| |||| |||||||||||||| |||| ||||||||||||||    
T  10256831 ttattgaatgaatctaaaaagtgaattttttcttataatagtgat 10256787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 50334932 - 50335053
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||||||||| ||| ||||||||||||||||| |||||| ||  |||||||||||  || | | |||||||||||||| ||||||||||     
T  50334932 tattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatatatctaaaaaa 50335031  T
Q  105 tgaagttttacttataatagtga 127  Q
    | || |||| |||||||||||||    
T  50335032 t-aaattttgcttataatagtga 50335053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 35239782 - 35239682
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||| ||||| || || ||| |||||||||||||| || |||||| ||| ||||||||||||||  | | ||||||||||||||||||||||||||    
T  35239782 tattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatctaaaaag 35239683  T
Q  105 t 105  Q
    |    
T  35239682 t 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 29497471 - 29497369
Alignment:
Q  23 acttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataat 122  Q
    |||||| |||||||||||| |||| || ||| ||| ||||||| ||||||| | | |||||||| |||||||||||||||||| || |||| ||||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  123 agt 125  Q
    |||    
T  29497371 agt 29497369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 50335049 - 50334932
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| || | |||| ||||| ||||||||||| ||||||| | ||| || || ||| | || | |||||||||||||||||||||||| |    
T  50335049 tattataagcaaaattt-attttttagatatattgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatctaaaatg 50334951  T
Q  105 tgaagttttacttataata 123  Q
    |||||||||  ||||||||    
T  50334950 tgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 32711221 - 32711319
Alignment:
Q  9 ataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtga 107  Q
    ||||||||||  |||||||| || | |||||||||||| |||||| | |||| ||||||||||  || | || |||||||||||| |||||||||||||    
T  32711221 ataagcaaaaagtcactttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagtga 32711319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 29497371 - 29497471
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    |||||||||||||| || |||||| ||||||||||| ||||| ||||||  || ||  | || ||||| || | ||||||| ||||||||||||||||||    
T  29497371 tattataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaaag 29497470  T
Q  105 t 105  Q
    |    
T  29497471 t 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 35239682 - 35239786
Alignment:
Q  23 acttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataat 122  Q
    |||||| ||||||||||||||||| ||||||  || || || || ||||| || | ||||| |||||||||||||||||| || || ||||  |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  123 agtga 127  Q
    |||||    
T  35239782 agtga 35239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 53711868 - 53711998
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaa 100  Q
    ||||||||||||| |||| ||||||||| | |||| || ||||||| |||||| |   ||||  |||||||| || |  ||||||||||||| ||| |||    
T  53711868 tcattattataagtaaaatttcactttttaaatactttaaataattaatgtatttgatctttcatatagactagatacgttaattattcaatatatataa 53711967  T
Q  101 aaagtgaagttttacttataatagtgatgaga 132  Q
    ||| | || |||||||||| ||||||| ||||    
T  53711968 aaa-ttaaattttacttatgatagtgacgaga 53711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 42912385 - 42912351
Alignment:
Q  90 aatgtatctaaaaagtgaagttttacttataatag 124  Q
    |||||||||||||||||||||||| ||||||||||    
T  42912385 aatgtatctaaaaagtgaagttttgcttataatag 42912351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 42912352 - 42912385
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacatt 38  Q
    |||||||||||||||||||||||| |||||||||    
T  42912352 tattataagcaaaacttcactttttagatacatt 42912385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 53711916 - 53711867
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    |||||||||| || |||| ||||||||||| |||||||||||||| ||||    
T  53711916 attaattatttaaagtatttaaaaagtgaaattttacttataataatgat 53711867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 48593255 - 48593175
Alignment:
Q  25 ttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagt 105  Q
    |||| |||| |||||||||||| |||||| | | || |||| |||||  || | || ||||||||||||||||||||||||    
T  48593255 tttttagattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaagt 48593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 8996882 - 8996792
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgta 95  Q
    ||||||||||||||||  |||||  ||||||||||||||||  |||||||||| |||||||||||||| || | |||||||||||||||||    
T  8996882 tattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 8717540 - 8717643
Alignment:
Q  25 ttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataatag 124  Q
    |||| ||||||||| ||||||| |||||| ||| |||||||||| ||| || | |||| ||||||||||||| |||||| | || ||| |||||||||||    
T  8717540 tttttagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttaacttataatag 8717639  T
Q  125 tgat 128  Q
    ||||    
T  8717640 tgat 8717643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 10495729 - 10495777
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  10495729 attaaatattcaatgtatctaaaaagtgaaattttgcttataatagtga 10495777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 43100804 - 43100756
Alignment:
Q  79 attaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  43100804 attaattattcaatgtatctaaaaaatgaatttttgcttataatagtga 43100756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 8996791 - 8996729
Alignment:
Q  66 atagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataatagtgat 128  Q
    ||||||| || | |||||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  8996791 atagactagatacattaattattcaatgtatctaaaaaccgaaattttgcttataatagtgat 8996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 8996792 - 8996886
Alignment:
Q  33 tacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagttttacttataatagtga 127  Q
    |||||||||||||| |||||| ||| || || || |||||  | | ||| ||||||||||||||||| |||||  |||||| |||||||||||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtga 8996886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 20218557 - 20218679
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaag 104  Q
    ||||||||||||||   ||||||| || | ||||||||||   ||||||  || |  |||||||||||||| | || |||||||||||| ||||||||||    
T  20218557 tattataagcaaaaaaacactttttagtttcattgaataaccgatgtatgcagtcagtattatagactggatacatcaattattcaatgaatctaaaaag 20218656  T
Q  105 tgaagttttacttataatagtga 127  Q
    |||  | || |||||||||||||    
T  20218657 tgatttcttgcttataatagtga 20218679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 13953774 - 13953899
Alignment:
Q  3 attattataagcaaaacttcacttttc-agatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaa 101  Q
    |||||||||||||||| || | ||||  ||||| ||| |||||||  | ||||||| |||||||||| | | || | ||| |||||  ||||||||||||    
T  13953774 attattataagcaaaattttatttttttagatatattaaataattagtctatatagtctttattataaattagatatattgattatctaatgtatctaaa 13953873  T
Q  102 aagtgaagttttacttataatagtga 127  Q
    | ||||||||||  ||||||||||||    
T  13953874 atgtgaagttttgtttataatagtga 13953899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 14094981 - 14095106
Alignment:
Q  3 attattataagcaaaacttcacttttc-agatacattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaa 101  Q
    |||||||||||||||| || | ||||  ||||| ||| |||||||  | ||||||| |||||||||| | | || | ||| |||||  ||||||||||||    
T  14094981 attattataagcaaaattttatttttttagatatattaaataattagtctatatagtctttattataaattagatatattgattatctaatgtatctaaa 14095080  T
Q  102 aagtgaagttttacttataatagtga 127  Q
    | ||||||||||  ||||||||||||    
T  14095081 atgtgaagttttgtttataatagtga 14095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 10495773 - 10495725
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  10495773 tattataagcaaaatttcactttttagatacattgaatatttaatgtat 10495725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 39792136 - 39792211
Alignment:
Q  35 cattgaataattcatgtatatagcctttattatagactggacagattaattattcaatgtatctaaaaagtgaagt 110  Q
    |||| ||||||| |||||| |||  ||||||||||| | || | |||||||||||| |||||||||||| ||||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacattaattattcattgtatctaaaaaatgaagt 39792211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 43100760 - 43100801
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataatt 46  Q
    |||||||||||||| |||| |||| |||||||||||||||||    
T  43100760 tattataagcaaaaattcattttttagatacattgaataatt 43100801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 8996734 - 8996782
Alignment:
Q  5 tattataagcaaaacttcacttttcagatacattgaataattcatgtat 53  Q
    |||||||||||||| |||  |||| ||||||||||||||||| ||||||    
T  8996734 tattataagcaaaatttcggtttttagatacattgaataattaatgtat 8996782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34008 - 33971
Alignment:
Q  1 tcattattataagcaaaacttcacttttcagatacatt 38  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  34008 tcattattacaagcaaaacttcactttttagatacatt 33971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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