View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20235_high_4 (Length: 491)
Name: NF20235_high_4
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Complemental strand, 2866333 - 2865864
Alignment:
| Q |
15 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2866333 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctgttatatttaagaataggcgactaaagc |
2866234 |
T |
|
| Q |
115 |
tttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866233 |
tttacaccaacaatagcggttgttggtggatgtcggggtggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaa |
2866134 |
T |
|
| Q |
215 |
gaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggt |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2866133 |
gaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacgcggttatctactctatggt |
2866034 |
T |
|
| Q |
315 |
ccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866033 |
ccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatg |
2865934 |
T |
|
| Q |
415 |
agttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattcttctct |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2865933 |
agttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctct |
2865864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 2860954 - 2860484
Alignment:
| Q |
15 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860954 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaataggcgactaaagc |
2860855 |
T |
|
| Q |
115 |
tttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860854 |
tttacaccaacaatagcggttgttggtggatgtcagggtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaaccggagaa |
2860755 |
T |
|
| Q |
215 |
gaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggt |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860754 |
gaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggt |
2860655 |
T |
|
| Q |
315 |
ccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860654 |
ccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgacgtgtatgatcttgaattaacaactgtcaaggataacaatg |
2860555 |
T |
|
| Q |
415 |
agttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattcttctctc |
485 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2860554 |
agttaaaaagacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctctc |
2860484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 2885523 - 2885053
Alignment:
| Q |
15 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885523 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaataggcgactaaagc |
2885424 |
T |
|
| Q |
115 |
tttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaa |
214 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885423 |
tttacaccaacaatggtggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaaccggagaa |
2885324 |
T |
|
| Q |
215 |
gaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggt |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2885323 |
gaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactttatggt |
2885224 |
T |
|
| Q |
315 |
ccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2885223 |
ccaccaggaactgggaaatctaccatgatatcggctattgcaaatttcatgaactacgatgtatatgatctagaattaaccactgtcaaggataacaatg |
2885124 |
T |
|
| Q |
415 |
agttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattcttctctc |
485 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2885123 |
agttgaaaacacttttgattgagacgtcaagcaaatcagttatcgttattgaagatattgattgttctctc |
2885053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 153 - 484
Target Start/End: Complemental strand, 2910231 - 2909900
Alignment:
| Q |
153 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
252 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
2910231 |
tggagtcacacaacttttgagcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaggaagagatcataaacgatcttgttaaattcaaga |
2910132 |
T |
|
| Q |
253 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2910131 |
aagggaaagagtattatgctaaagttggaaaggcgtggaaacgtggttatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctat |
2910032 |
T |
|
| Q |
353 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtcgagcaaatca |
452 |
Q |
| |
|
||| |||||||||||||| || || ||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
2910031 |
tgcgaatttcatgaactatgacgtttatgatcttcaattaacaattgtcaaggataactatgagttgaaaagacttttgattgagacatcgagtaaatcg |
2909932 |
T |
|
| Q |
453 |
gttatcgttattgaagatattgattcttctct |
484 |
Q |
| |
|
|||| |||||||| |||||||||| |||||| |
|
|
| T |
2909931 |
attatagttattgacgatattgattgttctct |
2909900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 153 - 485
Target Start/End: Original strand, 2842113 - 2842445
Alignment:
| Q |
153 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
252 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| ||||||||||||||| ||||||| | |||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
2842113 |
tggagtcacacaacttttgagcacccggcaagttttgaaacacttgctttggaaccaaaaaagaaagaagagattctaaatgatcttgttaaattcaaga |
2842212 |
T |
|
| Q |
253 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||| |||||||| || ||||||||||||||||| ||||| |
|
|
| T |
2842213 |
aagggaaagagtattatgctaaagttggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatctaccatgatatcggctat |
2842312 |
T |
|
| Q |
353 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtcgagcaaatca |
452 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2842313 |
tgctaatttcatgaactatgatgtgtatgatcttgaattaacaattgtcaaggataacaatgagttgaaaagacttttgattgagacgtcgagtaaatcg |
2842412 |
T |
|
| Q |
453 |
gttatcgttattgaagatattgattcttctctc |
485 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |
|
|
| T |
2842413 |
attattgttattgaagatattgattgttctctc |
2842445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 153 - 485
Target Start/End: Complemental strand, 2833507 - 2833175
Alignment:
| Q |
153 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
252 |
Q |
| |
|
|||| |||||||| ||||| ||| |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| ||||||| |
|
|
| T |
2833507 |
tggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaaga |
2833408 |
T |
|
| Q |
253 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
2833407 |
aaggtaaagagtattatgctaaagttggaaaggcttggaaacgtggttatctactttatggtcctccaggaactggaaaatctactatgatatcagctat |
2833308 |
T |
|
| Q |
353 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtcgagcaaatca |
452 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| || ||||| |
|
|
| T |
2833307 |
agcaaattacatgaactatgatgtgtatgatcttgaattaacaactgttaaggataacaatgagttgaagagacttttgattgaaacgtcaagtaaatcg |
2833208 |
T |
|
| Q |
453 |
gttatcgttattgaagatattgattcttctctc |
485 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||| |
|
|
| T |
2833207 |
attatagttatcgaagatattgattgttctctc |
2833175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 174 - 482
Target Start/End: Original strand, 14577872 - 14578180
Alignment:
| Q |
174 |
caccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgcta |
273 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||||||||| ||| |||||||| |||| |||||| ||| |||||||| ||||||| |
|
|
| T |
14577872 |
caccctgcaaggttcgaaacacttgctatggatgcaaagaagaaagaagagataatagacgatcttgttaagttcaaggcaggtaaagagtactatgcta |
14577971 |
T |
|
| Q |
274 |
aagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacga |
373 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
14577972 |
aagttggaaaggcttggaaacgcggttatttacttttcggtcctccaggaaccggaaaatctaccatgatatcggctattgcaaattttatgaactacga |
14578071 |
T |
|
| Q |
374 |
tgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatatt |
473 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||| || ||||| |||||| |
|
|
| T |
14578072 |
cgtttatgatcttgaattaacaactatcaaggataacaatgagttgaaaagacttttgattgcgacgtcaagcaaatcaattatagtgattgaggatatt |
14578171 |
T |
|
| Q |
474 |
gattcttct |
482 |
Q |
| |
|
|||| |||| |
|
|
| T |
14578172 |
gattgttct |
14578180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 213 - 484
Target Start/End: Original strand, 2828815 - 2829086
Alignment:
| Q |
213 |
aagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatg |
312 |
Q |
| |
|
||||||||||| || ||||| |||||| |||| ||||| | ||| |||||||| ||| ||||||| || |||||||||||||| ||||||||||| | || |
|
|
| T |
2828815 |
aagaaagaagaaattataaatgatcttgttaagttcaaaacaggtaaagagtactatactaaagtcgggaaggcttggaaacgtggttatctactttttg |
2828914 |
T |
|
| Q |
313 |
gtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaa |
412 |
Q |
| |
|
|||| || |||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
2828915 |
gtcctcctggaactggaaaatctacgatgatatcagctattgctaatttcatgaattatgatgtgtatgatcttgagttaacaactatcaagaataacaa |
2829014 |
T |
|
| Q |
413 |
tgagttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattcttctct |
484 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
2829015 |
tgagttgaaaagacttttgatcgagacgtcgagtaaatcgattatagttattgaagatattgattgttctct |
2829086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 2841963 - 2842053
Alignment:
| Q |
15 |
actttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggc |
105 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||| ||||||||||||||||||| ||||| |||||||||||||| | | | |||||||||| |
|
|
| T |
2841963 |
actttccataaaaggcatcgtgaactcatcactacctcttacatacaacatgttttggaacaaggaaaggctataacaatgaagaataggc |
2842053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 2833654 - 2833551
Alignment:
| Q |
18 |
ttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagcttt |
117 |
Q |
| |
|
||||| |||| |||||| || |||| ||| |||||||||| |||||||||||||| ||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
2833654 |
ttccataaaaagcatcgtgaagtcatcactacctcttacattcaacatgtgttggatgaaggaaaatctattatgagcaagaataggcaactaaagcttt |
2833555 |
T |
|
| Q |
118 |
acac |
121 |
Q |
| |
|
|||| |
|
|
| T |
2833554 |
acac |
2833551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 2828636 - 2828712
Alignment:
| Q |
51 |
tcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagctttacaccaacaa |
127 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||||| ||| ||||||||| || |||||||| |||||||| |
|
|
| T |
2828636 |
tcttatatccaacatgtgttagaacaaggaaaggctattacattgaagaataggaagcttaagctttataccaacaa |
2828712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 14577707 - 14577778
Alignment:
| Q |
18 |
ttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctatt |
89 |
Q |
| |
|
|||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
14577707 |
ttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
14577778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 2910376 - 2910271
Alignment:
| Q |
22 |
acaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagctttacac |
121 |
Q |
| |
|
||||||||||| | |||||||| ||| |||| ||||| ||||||||||| || |||||||| ||||| | ||||| |||| |||||||||||||| |
|
|
| T |
2910376 |
acaaaaggcatggtgatctcatcactacctcgtacatccaacatgtgttagaacaaggaaaacctattgcacagaagaagaggcagctaaagctttacac |
2910277 |
T |
|
| Q |
122 |
caacaa |
127 |
Q |
| |
|
||||| |
|
|
| T |
2910276 |
taacaa |
2910271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 1800792 - 1800922
Alignment:
| Q |
264 |
tattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttca |
363 |
Q |
| |
|
|||||||| ||| | || |||||||||||||| |||||| |||| |||||||| |||||||| || |||||||| |||||| | ||||| || ||||||| |
|
|
| T |
1800792 |
tattatgcaaaaatcggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaatttca |
1800891 |
T |
|
| Q |
364 |
tgaactacgatgtatatgatcttgaattaac |
394 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
1800892 |
tgaactatgatgtttatgatcttgaattaac |
1800922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 53395497 - 53395574
Alignment:
| Q |
284 |
ggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaattt |
361 |
Q |
| |
|
|||||||||| | |||||||| || |||||||| ||||||||||| ||||||| |||||| ||||||| || ||||| |
|
|
| T |
53395497 |
ggcttggaaaagaggttatcttctttatggtcctccaggaactggaaaatctagcatgattgctgctatggctaattt |
53395574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 44396056 - 44396248
Alignment:
| Q |
285 |
gcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatc |
384 |
Q |
| |
|
||||||||| |||||||| |||| | |||||| ||||| ||||| ||||| || ||||| ||||||| || ||||| || || ||||| |||||| |
|
|
| T |
44396056 |
gcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatgatt |
44396155 |
T |
|
| Q |
385 |
ttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgatt |
477 |
Q |
| |
|
| || |||||| | || |||||||| | |||||||| | |||||||||||||| | || || ||| |||| ||||||||||| ||||||| |
|
|
| T |
44396156 |
tagagttaacagcagtgaaggataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgatt |
44396248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 8043817 - 8043880
Alignment:
| Q |
273 |
aaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatcta |
336 |
Q |
| |
|
|||||||| | |||||||||||| |||||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
8043817 |
aaagttggtagggcttggaaacgtggttatttgttgtatggtcctccaggaactgggaaatcta |
8043880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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