View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_40 (Length: 239)
Name: NF20235_high_40
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_40 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 6869529 - 6869303
Alignment:
| Q |
19 |
cacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagcacaacctttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
6869529 |
cacttacccctttctaatccatcaaaagattaacagtttt-gaagtctctatgtataatgttgttttgatgcaaataaggaagagtaagcacaacgtttt |
6869431 |
T |
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| Q |
119 |
gaatatgcagaatgtcatacatatttccaccacgcatatattctcagaaaaaacatatatgtatttaaaatgacagagttcctaatact---------ta |
209 |
Q |
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| T |
6869430 |
gaatatgcagaaagtcatacatatttccaccacgcatatattctcagaaaaaac--atatgtatttaaaatgacagagttcctaataatttttgtctgta |
6869333 |
T |
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| Q |
210 |
aacaaacaataatgtaagtgcctctaatac |
239 |
Q |
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| T |
6869332 |
aacaaacaataatgtaagtgcctctaatac |
6869303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 3106606 - 3106798
Alignment:
| Q |
19 |
cacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagcacaacctttt |
118 |
Q |
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| T |
3106606 |
cacttacccctttctcatccatcaaaagatttacagtttt-gaggtctctatgtataatgttgttttgatgcaaataaggaagagtaagcacaacctttt |
3106704 |
T |
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| Q |
119 |
gaatatgcagaatgtcatacatatttccaccacgcatatattctca-gaaaaaacatatatgtatttaaaatgac---agagttcctaatactt |
208 |
Q |
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| T |
3106705 |
gtatatgcagaaagtcatacttatttccaccaggcatatattcttaggaaaaaacatacatgtattgaaaatgacagtagagttcctaatactt |
3106798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 48731181 - 48731389
Alignment:
| Q |
42 |
aaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagcacaaccttttgaatatgcagaatgtcatacata |
141 |
Q |
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||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
48731181 |
aaaagattaacagtttt-gaggtctgtatgaataatgttgttttgatgcaaataaggaagagtgagcacaaccttttgtatatgcagatagtcatacata |
48731279 |
T |
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| Q |
142 |
tttccaccacgcatatattctcagaaaaaacatatatgtatttaaaatgac---agagttcctaatact---------taaacaaacaataatgtaagtg |
229 |
Q |
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| T |
48731280 |
tttccaccatacatatgttctcagaaaaaacatatatgtattgaaaatgacagtagagttcctaatactttttgtctgtaaacaaacaataatgtaagtg |
48731379 |
T |
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| Q |
230 |
cctctaatac |
239 |
Q |
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||| |||||| |
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| T |
48731380 |
cctttaatac |
48731389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 8450187 - 8450285
Alignment:
| Q |
95 |
aaggaagaggaagcacaaccttttgaatatgcagaatgtcatacatatttccaccacgcatatattctcagaaaaaacatatatgtatttaaaatgaca |
193 |
Q |
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||||||| | |||||| ||||| || |||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
8450187 |
aaggaagggtaagcacgaccttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaaaaacatatatgtattgaaaatgaca |
8450285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 8450070 - 8450147
Alignment:
| Q |
19 |
cacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataag |
97 |
Q |
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| T |
8450070 |
cacttacccctttctcatccatcaaaagattagcagtttt-gaggtctcgatgtataatgttgttttgatgcaaataag |
8450147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 41222138 - 41222008
Alignment:
| Q |
19 |
cacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagcacaacctttt |
118 |
Q |
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| T |
41222138 |
cacttacccctttctcatccatcaaaatactaaca-tttttgaggtctctatgtataatgatgttttgatgcaaataaggaagagtaagtacaacctttt |
41222040 |
T |
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| Q |
119 |
gaatatgcagaatgtcatacatatttccacca |
150 |
Q |
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| T |
41222039 |
gtacatgctgaaagtcatagatatttccacca |
41222008 |
T |
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