View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_high_9 (Length: 409)
Name: NF20235_high_9
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 20360572 - 20360198
Alignment:
| Q |
16 |
ataacaaacaaacgataaaaaattgacatgttagtcctttcgttaaattgggggttccaatactaattacaattgcaaatatagtactttaggtcttc-- |
113 |
Q |
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| T |
20360572 |
ataacaaacaaacgataaaaaattgacatgttagtcctttcgtaaaattgggggttccaatactaattacaattgcaaatatagtactttaggtcttcag |
20360473 |
T |
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| Q |
114 |
tattcccatgataagacataaattccaacctatacctgagattgtacttgcatgtctctataacagccaaaaattgctccttcaggatcgtcatagcaat |
213 |
Q |
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| T |
20360472 |
tattcccatgataagacataaattccaacctatacctgagattgtacttgcatgtctctataacagccaaaaattgctccttcaggatcgtcatagcaat |
20360373 |
T |
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| Q |
214 |
atgatcaccctttggcacagggttggtgcaacatgctaaccggaaacattactcaaagcttgtgcagatgttttatgttgggtcaattatttcaaagtaa |
313 |
Q |
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| T |
20360372 |
atgatcaccctttggcacagggttggcgcaacatgctaaccggaaacattattcaaagcttgtgcagatgttttatgttgggtcaattatttcaaagtaa |
20360273 |
T |
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| Q |
314 |
acgggacattaatcttagcttctatagcttgcttagatccatacagggccatggtatgaggactttacatgatat |
388 |
Q |
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| T |
20360272 |
acgggacattaatcttagcttctatagcttgcttagatccatacagggccatggtatgaggactttacatgatat |
20360198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 5288950 - 5288812
Alignment:
| Q |
18 |
aacaaacaaacgataaaaaattgacatgttagtc----ctttcgttaaattgggggttccaatactaattacaattgcaaatatagtactttaggtcttc |
113 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
5288950 |
aacaaacaaacgataaaaaattgacatgttagtgactactttcgtaaaattgggggttccaataccaattacaattgcaaatatagtactttaggtctcc |
5288851 |
T |
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| Q |
114 |
--tattcccatgataagacataaattccaacctatacct |
150 |
Q |
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| T |
5288850 |
agtattcccatgataagacataaattccaacctacacct |
5288812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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