View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_10 (Length: 408)
Name: NF20235_low_10
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 23229871 - 23229467
Alignment:
| Q |
9 |
gaagaatataaaatggagttgtatgaaatttacattgacaaagcaatcatgaaaatgaagacgaattaagcttgcaccaattcgtgaatcagattgtaga |
108 |
Q |
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| T |
23229871 |
gaagaaaataaaatggagttgtatgaaatttacattgacaaagcaatcatgaaaatgaagacgaattaagcttgcaccaattcgtgaatcagattgtaga |
23229772 |
T |
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| Q |
109 |
gcttgttgaacagcatttttcacaatggatgacacattagggcatgtgttagaatagaaagttgcattcaattgtccatttgaaggataaagaaggatta |
208 |
Q |
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| T |
23229771 |
gcttgttgaacagcatttttcacaatggatgacacattagggcatgtgttagaatagaaagttgcattcaattgtccatttgaaggataaagaaggatta |
23229672 |
T |
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| Q |
209 |
acgaaaagaaaatgatagcttgtatagttgaagaaagcatgcttgattttagtattttttcactt--aggtattaatattatttgcttagtgattcatat |
306 |
Q |
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| T |
23229671 |
acgaaaagaaaatgatagcttgtatagttgaagaaagcatgattgattttagtatttttttacttaaaggtattaatattatttgcttagtgattcatat |
23229572 |
T |
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| Q |
307 |
caaggtgatatatacacatatatatagataatgaaagcgcgtcaaacatttttattactttaagaactttctttaggata---aattattctcaagttat |
403 |
Q |
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| T |
23229571 |
caaggtgatacatgcacatatatatagataatgaaagcgcgtcaatcatttttattactttaagaactttctttaggataaataattattcacaagttat |
23229472 |
T |
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| Q |
404 |
tacct |
408 |
Q |
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| T |
23229471 |
tacct |
23229467 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 31854445 - 31854406
Alignment:
| Q |
34 |
aaatttacattgacaaagcaatcatgaaaatgaagacgaa |
73 |
Q |
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| T |
31854445 |
aaatttacattgacaaagcagtcatgaaaatggagacgaa |
31854406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 52301249 - 52301214
Alignment:
| Q |
38 |
ttacattgacaaagcaatcatgaaaatgaagacgaa |
73 |
Q |
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| T |
52301249 |
ttacattgacaaagcaatcatgaaagtgaagacgaa |
52301214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 27201480 - 27201448
Alignment:
| Q |
41 |
cattgacaaagcaatcatgaaaatgaagacgaa |
73 |
Q |
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| T |
27201480 |
cattgacaaagcaatcatggaaatgaagacgaa |
27201448 |
T |
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