View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_12 (Length: 387)
Name: NF20235_low_12
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_12 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 31904736 - 31904439
Alignment:
| Q |
18 |
aggcaaaaaagaccccacacattaaaattttctttacaccttaattaatattgaaaactattgttccgatgctgtaataactaatatgtgacttaacata |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31904736 |
aggcaaaaaagaccccacacattaaaatttgctttacaccttaattaatattgaaaactattgttccgacgctgtaataactaatatgtgacttaacata |
31904637 |
T |
|
| Q |
118 |
ctcttctttcaaactgtacttcaaatctacaataaaattgctggctttatatatgttggattttggagaattattttgtatccttttctaattgtatcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904636 |
ctcttctttcaaactgtacttcaaatctacaataaaattgctggctttatatatgttggattttggagaattattttgtatccttttctaattgtatcct |
31904537 |
T |
|
| Q |
218 |
tccccttttttattctaattgtatcctttcatcactttcatcctttgttgctacttacaaataatgctgctaaaataacaacatattgattgaattgagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31904536 |
tccccttttttattctaattgtatcctttcatcactttcatcctttgttgctacttaca---aatgctgctaaaataacaacatattgattgaattgagt |
31904440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 14111820 - 14111779
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
14111820 |
aatgatgctaaaataacaacatattgattggattgagtagag |
14111779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 34924227 - 34924186
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
34924227 |
aatgatgctaaaataacaacatattgattggattgagtagag |
34924186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 57559 - 57600
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
57559 |
aatgatgctaaaataacaacatattgattggattgagtagag |
57600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 19848363 - 19848404
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
19848363 |
aatgatgctaaaataacaacatattgattggattgagtagag |
19848404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 41223149 - 41223108
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
41223149 |
aatgatgctaaaataacaacatattgattggattgagtagag |
41223108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 48085146 - 48085174
Alignment:
| Q |
289 |
aaaataacaacatattgattgaattgagt |
317 |
Q |
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| T |
48085146 |
aaaataacaacatattgattgaattgagt |
48085174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 32573628 - 32573669
Alignment:
| Q |
280 |
aatgctgctaaaataacaacatattgattgaattgagtagag |
321 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
32573628 |
aatgatgctaaaataacaacatattgattggattgagtagag |
32573669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 7505491 - 7505463
Alignment:
| Q |
289 |
aaaataacaacatattgattgaattgagt |
317 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7505491 |
aaaataacaacatattgattgaattgagt |
7505463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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