View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_15 (Length: 379)
Name: NF20235_low_15
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 372
Target Start/End: Complemental strand, 37925574 - 37925218
Alignment:
| Q |
24 |
atacaccattggttcaaagtgtgtaattaaagttcttgatattcacttttagccaattccacacactagacagtgatactgatacacttcaattacttat |
123 |
Q |
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| T |
37925574 |
atacaccattggttcaaagtgtgtaattaaagttcttgatattcacttttagccaattccacacactagacagtgatactgatacacttcaattacttat |
37925475 |
T |
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| Q |
124 |
ataaatttaaatgtattcataagcataacggcagaaacaagggtatgcctgtaatatagtttccattctaacagtaaaaatgtgtttattggagcctttc |
223 |
Q |
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| T |
37925474 |
ataaatttaaatgtattcataagcataacggcagaaacaagggtaagcctgtaatatagtttccattctaacagtaaaaatgtgtttattggagcttttc |
37925375 |
T |
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| Q |
224 |
ttttctcaaattttgcaggctaaggcttaatgaaagaacaaggagtcatggactggttaatttagctct--------cagatgattatgtttgttaaact |
315 |
Q |
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| T |
37925374 |
ttttctcaaattttgcaggctaaggcttaatgaaagaacaaggagtcatggactggttaatttagctctcagactctcagatgattgtgtttgttaaact |
37925275 |
T |
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| Q |
316 |
taactatacttattaatgcatcaataacattaagcttacccacaaaaagaataatct |
372 |
Q |
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| T |
37925274 |
taactatacttattaatgcatcaataacaataagcttacccacaaaaagaataatct |
37925218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 41472821 - 41472782
Alignment:
| Q |
112 |
tcaattacttatataaatttaaatgtattcataagcataa |
151 |
Q |
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| T |
41472821 |
tcaaatacttatataaatttaaatgtactcataagcataa |
41472782 |
T |
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