View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_16 (Length: 376)
Name: NF20235_low_16
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 2842919 - 2843280
Alignment:
| Q |
5 |
tgaggagga-gcagagaaaaagatagaggatgaggaagcaaagctcaaggcagagaaagagaaactagaattggctcaagaggaagaaaaggttaaggct |
103 |
Q |
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| T |
2842919 |
tgaggaggaagcaaagaaaaagatagaggatgaggaagtaaagctcaaggcagagaaagagaaactagaattggctcaagaggaagaaaaggttaaggct |
2843018 |
T |
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| Q |
104 |
gatgaaaagttataggaaaatgtgaaggagaatggtgtggaagagaatggtgtcatccattaatttggattagattaatttcagtatttaagtcaattta |
203 |
Q |
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| T |
2843019 |
gatgaaaagttagaggaaaatgtgaaggagaatggtgtgaaagagaatggcgtcatccattgatttggattagattaatttcagtatttaagtcaattta |
2843118 |
T |
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| Q |
204 |
gtgtattcagtaatctaaataatattttgaaccttttatataaaaggatggttaagtattattatgtatatgttcatattttttgttttaatcaagtaaa |
303 |
Q |
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| T |
2843119 |
gtgtattcagtagtctaaataatattttgaaccttttatataaaagcatggttaagtattattatgtatatgttcatattttttgttttaatcaagtaaa |
2843218 |
T |
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| Q |
304 |
taaaaaggctaga---gagggggaagcaaaactaatgaaagagaaagataaacaagaaaatg |
362 |
Q |
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| T |
2843219 |
taaaaaggctagagaggaggaggaagcaaaactaatgaaagagaaaggtaaacaagaaaatg |
2843280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 2832701 - 2832408
Alignment:
| Q |
5 |
tgaggagga-gcagagaaaaagatagaggatgaggaagcaaagctcaaggcagagaaagagaaactagaattggctcaagaggaagaaaaggttaaggct |
103 |
Q |
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| T |
2832701 |
tgaggaggaagcaaagaaaaagatagaggatgaggaagcaaagctcaaggcacagaaagagaaacaggaattgattcaagaggaagaaaaggttaaggtt |
2832602 |
T |
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| Q |
104 |
gatgaaaagttataggaaaatgtgaaggagaatggtgtggaagagaatggtgtcatccattaatttggattagattaatttcagt-atttaagtcaattt |
202 |
Q |
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| T |
2832601 |
gatgaaaagttagaggaaaaagtgaaggagaatggtgtgaaagagaatggtgttatccattaatttggattagattaatttcagtaatttaaatcatttt |
2832502 |
T |
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| Q |
203 |
agtgtattca-----gtaatctaaataatattttgaaccttttatataaaaggatggttaagtattattatgtatatgttcatattttttgtttt |
292 |
Q |
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| T |
2832501 |
agtgtattcattaatctaatctaaataatatttagaaccttttatgtaaaagcatagtttagtatta-tatgtacatctttatatattttgtttt |
2832408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 2829513 - 2829610
Alignment:
| Q |
5 |
tgaggagga-gcagagaaaaagatagaggatgaggaagcaaagctcaaggcagagaaagagaaactagaattggctcaagaggaagaaaaggttaagg |
101 |
Q |
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| T |
2829513 |
tgaggaggaagcaaagaaaaagatagaagatgaggaagcaaagctcaaggcagagaaagagaaacaagaattgactcaagaggaagaaaaggtgaagg |
2829610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 300
Target Start/End: Original strand, 2829610 - 2829774
Alignment:
| Q |
146 |
gagaatggtgtcatccattaatttggattagattaatttcagt-atttaagtcaatttagtgtattca-----gtaatctaaataatattttgaaccttt |
239 |
Q |
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| T |
2829610 |
gagaatggtgtcatctattaatttggattagattaattttagtgatgtaaatctatttagtgtattcactaatctaatctaaataatatttagaaccttt |
2829709 |
T |
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| Q |
240 |
tatataaaag----gatggttaagtattattatgtatatgttcatattttttgttttaatcaagt |
300 |
Q |
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| T |
2829710 |
aatgtaaaagcatatatagttgagtattatgatgtacatgtttatatattttattttgatcaagt |
2829774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 14578680 - 14578740
Alignment:
| Q |
81 |
aagaggaagaaaaggttaaggctgatgaaaagttataggaaaatgtgaaggagaatggtgt |
141 |
Q |
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| T |
14578680 |
aagaggaagaaaaggtggaggctattgaaaattcaaaggaaaatgtgaagaagaatggtgt |
14578740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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