View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_19 (Length: 341)
Name: NF20235_low_19
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 30614057 - 30613742
Alignment:
| Q |
10 |
gcagagacattgaagggccttatcttgattacatacataaacagttcaataaaccggttcttacttcaggactggttatacttgaaaacccaaattatgt |
109 |
Q |
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| T |
30614057 |
gcagagacattgaagggccttatcttgattacatacataaacagtttaataaaccggctcttacttaaggactg-ttatacttgaaaacccaaattatgt |
30613959 |
T |
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| Q |
110 |
tttgaattaaagtgggtaaatttaaataacttgacgtaaaaatgtagaaaatataaggacttgaaattaaatgatgagttagagtatgctctagattcaa |
209 |
Q |
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| T |
30613958 |
tttgaattaaagtgggtaattttaaataacttgacgtaaaaatgtagaaaatataaggacttgaaattaaatgatgagttggagtatgctctggattcaa |
30613859 |
T |
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| Q |
210 |
acgggcacctgcaagtggacagtggaattgatccctcgaacttgtgtttcttttctatgttgtctgctttttaattgctccaatgttgttgatatatagt |
309 |
Q |
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| T |
30613858 |
acgggcacctgcaagtggacagtggaattgatccctcgaacttgtgtttcttttctatgctgtctgctttttaattgctccaatgttgttgatatatagt |
30613759 |
T |
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| Q |
310 |
tatacgtttgttgaaac |
326 |
Q |
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| T |
30613758 |
tatacgtttgttgaaac |
30613742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 30612041 - 30611932
Alignment:
| Q |
10 |
gcagagacattgaagggccttatcttgattacatacataaacagttcaataaaccggttcttacttcaggactggtt------atacttgaaaacccaaa |
103 |
Q |
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| T |
30612041 |
gcagagaaattgaaggaccttatcttgattacatacagaaacagtttaacaaaccggttcttacttcaggaccagttttaccgatacttgaaaactcaaa |
30611942 |
T |
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| Q |
104 |
ttatgttttg |
113 |
Q |
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| T |
30611941 |
ttatgttttg |
30611932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 30594693 - 30594622
Alignment:
| Q |
10 |
gcagagacattgaagggccttatcttgattacatacataaacagttcaataaaccggttcttacttcaggac |
81 |
Q |
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||||||| |||||||| ||||||||||||||| |||| ||||| || |||||| | |||||||||||||||| |
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| T |
30594693 |
gcagagagattgaaggaccttatcttgattacgtacaaaaacaatttaataaatcagttcttacttcaggac |
30594622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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