View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_low_2 (Length: 574)

Name: NF20235_low_2
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_low_2
NF20235_low_2
[»] chr4 (21 HSPs)
chr4 (1-165)||(27510758-27510922)
chr4 (1-165)||(38370098-38370261)
chr4 (21-165)||(6582339-6582483)
chr4 (49-165)||(12389201-12389317)
chr4 (52-162)||(40143277-40143387)
chr4 (1-138)||(2736654-2736796)
chr4 (49-165)||(35258242-35258363)
chr4 (52-155)||(48995737-48995840)
chr4 (54-165)||(31879506-31879617)
chr4 (27-92)||(22772484-22772549)
chr4 (24-140)||(9117328-9117444)
chr4 (7-143)||(23393162-23393298)
chr4 (49-162)||(46171668-46171786)
chr4 (7-143)||(49706402-49706538)
chr4 (49-146)||(35653305-35653402)
chr4 (21-118)||(39267410-39267507)
chr4 (163-217)||(7573851-7573905)
chr4 (79-164)||(16048053-16048138)
chr4 (7-78)||(32335450-32335521)
chr4 (78-146)||(38935827-38935895)
chr4 (68-152)||(47996603-47996686)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-165)||(54047-54211)
[»] chr8 (23 HSPs)
chr8 (1-164)||(9539946-9540104)
chr8 (20-165)||(26053579-26053729)
chr8 (46-155)||(10226774-10226883)
chr8 (32-165)||(10903005-10903138)
chr8 (32-164)||(33691637-33691769)
chr8 (49-162)||(40346980-40347093)
chr8 (21-146)||(15254948-15255073)
chr8 (21-142)||(42475673-42475789)
chr8 (79-162)||(27114944-27115027)
chr8 (32-165)||(19147561-19147699)
chr8 (2-122)||(28733992-28734111)
chr8 (7-143)||(4885488-4885624)
chr8 (20-124)||(21184105-21184209)
chr8 (54-165)||(14333977-14334087)
chr8 (78-161)||(34360455-34360538)
chr8 (78-165)||(36368557-36368644)
chr8 (80-143)||(33238112-33238175)
chr8 (32-114)||(19127339-19127421)
chr8 (53-123)||(40614657-40614727)
chr8 (85-133)||(13947146-13947194)
chr8 (1-61)||(27114898-27114957)
chr8 (32-91)||(8259099-8259158)
chr8 (52-109)||(17564444-17564501)
[»] chr3 (18 HSPs)
chr3 (1-162)||(33639388-33639554)
chr3 (28-161)||(50303197-50303330)
chr3 (21-165)||(55325190-55325333)
chr3 (22-141)||(32863566-32863685)
chr3 (21-143)||(50328344-50328466)
chr3 (49-162)||(13857101-13857214)
chr3 (27-165)||(40929339-40929482)
chr3 (7-143)||(50308995-50309130)
chr3 (21-148)||(50875472-50875599)
chr3 (82-165)||(5931171-5931254)
chr3 (21-146)||(25639397-25639527)
chr3 (7-143)||(40292911-40293047)
chr3 (83-165)||(5938048-5938130)
chr3 (57-165)||(10222989-10223102)
chr3 (53-133)||(13840770-13840850)
chr3 (32-123)||(44773975-44774066)
chr3 (49-143)||(18021762-18021856)
chr3 (7-143)||(44416405-44416541)
[»] chr7 (13 HSPs)
chr7 (21-155)||(8550599-8550733)
chr7 (21-165)||(11353684-11353827)
chr7 (21-140)||(46400048-46400167)
chr7 (79-165)||(35086453-35086539)
chr7 (32-165)||(45920042-45920175)
chr7 (52-165)||(32030300-32030418)
chr7 (32-158)||(45067526-45067652)
chr7 (35-143)||(31845141-31845249)
chr7 (54-143)||(40474411-40474500)
chr7 (32-143)||(33382364-33382475)
chr7 (52-133)||(28681887-28681968)
chr7 (90-165)||(27856572-27856647)
chr7 (32-143)||(32745894-32746005)
[»] chr6 (9 HSPs)
chr6 (12-162)||(23111304-23111454)
chr6 (1-162)||(1800888-1801049)
chr6 (27-147)||(12356338-12356458)
chr6 (49-165)||(17154272-17154388)
chr6 (54-165)||(33702599-33702710)
chr6 (57-146)||(8636150-8636239)
chr6 (52-165)||(29092751-29092864)
chr6 (49-143)||(27596508-27596602)
chr6 (53-157)||(29397928-29398031)
[»] chr2 (6 HSPs)
chr2 (27-165)||(5270420-5270558)
chr2 (52-165)||(31365529-31365642)
chr2 (49-161)||(2153983-2154095)
chr2 (7-143)||(43177090-43177226)
chr2 (80-161)||(25396438-25396524)
chr2 (1-70)||(36669843-36669912)
[»] chr5 (9 HSPs)
chr5 (1-137)||(33062037-33062173)
chr5 (7-165)||(3523147-3523305)
chr5 (80-157)||(42545701-42545778)
chr5 (22-143)||(32955809-32955930)
chr5 (33-133)||(31508461-31508561)
chr5 (57-165)||(26818347-26818460)
chr5 (32-165)||(31069152-31069280)
chr5 (91-143)||(8465186-8465238)
chr5 (78-143)||(28747606-28747671)
[»] chr1 (13 HSPs)
chr1 (32-165)||(24186669-24186802)
chr1 (52-165)||(34393662-34393775)
chr1 (49-165)||(34387533-34387649)
chr1 (54-162)||(34588858-34588966)
chr1 (52-161)||(27842540-27842649)
chr1 (32-143)||(790106-790217)
chr1 (49-162)||(51236288-51236406)
chr1 (49-165)||(22871275-22871391)
chr1 (92-161)||(8065386-8065455)
chr1 (49-143)||(17305062-17305156)
chr1 (1-143)||(33376507-33376644)
chr1 (20-160)||(32000582-32000727)
chr1 (52-133)||(32132027-32132108)
[»] scaffold0488 (1 HSPs)
scaffold0488 (78-143)||(7382-7447)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 27510758 - 27510922
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    |||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||  ||||||||||  ||||||||||||||||||||| |||    
T  27510758 catattaaccgaaccaaactgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagtta 27510857  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    || ||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||    
T  27510858 tggttcggttaaccgtttgcttgcctattaaccgaaccgaaccaaaaccaaaattttgaaccgaa 27510922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 38370098 - 38370261
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    |||||||||||||| |||| || || || |||||||||| ||||||||||  ||||||||| |||||||||||  || |||||||||||||||||| |||    
T  38370098 catattaaccgaactaaatcgagccgaaatgttgaaatggttcgaaataattgaaccgaaccgtttaaggtttgaaattaaccgaactgaaccaaagtta 38370197  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    || |||  ||||||||||||||   || |||| ||||||||||||||||||||||||||| ||||    
T  38370198 tggttc-attaaccgtttgcttgtctattaactgaaccgaaccaaaatcaaaattttgaatcgaa 38370261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 6582339 - 6582483
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    |||||||| | |||||||||||||  | |||||||||| || ||||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||| |    
T  6582339 gaaccaaaattttgaaatgattcgggaaaaccgaaccgcaccgtttaaggtatagagctaaccgaactgaaccaaagttatagttcggttaaccgttttc 6582438  T
Q  121 ttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
     ||| ||  |||||||||||||||||| ||| |||||||||||||    
T  6582439 ctacctatgaaccgaaccgaaccaaaaccaatattttgaaccgaa 6582483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 12389201 - 12389317
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||||||||||||||||  | || ||||||||||||||||||| ||||| |||||||||| |||| ||||| ||  ||||||||||||||| |||    
T  12389201 aaccgaaccgaactgtttaaggcatggagctaaccgaactgaaccaaagttatggttcggttaactgttttcttacctatgaaccgaaccgaaccataat 12389300  T
Q  149 caaaattttgaaccgaa 165  Q
    ||| |||||||||||||    
T  12389301 caatattttgaaccgaa 12389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 40143387 - 40143277
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| |||| |||| |  ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||  |||||||||||||||||| |||    
T  40143387 cgaaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatgaaccgaaccgaaccaaaaccaa 40143288  T
Q  152 aattttgaacc 162  Q
     ||||||||||    
T  40143287 tattttgaacc 40143277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2736654 - 2736796
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataacc-----gaaccgaactgtttaaggtttagaactaaccgaactgaaccaa 95  Q
    ||||||||| ||||||||  ||||| |||||||||||||||| | |||||||     ||||||||| ||||||| ||| |||||||||||||||||||||    
T  2736654 catattaactgaaccaaaccgaaccgaagtgttgaaatgatttggaataaccgaaccgaaccgaaccgtttaagatttggaactaaccgaactgaaccaa 2736753  T
Q  96 aattatgattcggttaaccgtttgcttacatactaaccgaacc 138  Q
    | ||||| |||||||||| ||||| || | || ||||||||||    
T  2736754 agttatggttcggttaactgtttgtttgcctattaaccgaacc 2736796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 35258242 - 35258363
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc-----gaaccgaacc 143  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||   || |||||     |||||||||     
T  35258242 aaccgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaagttataattcggttaaccgtttgcttgtctattaaccgaactgaaccgaact 35258341  T
Q  144 aaaatcaaaattttgaaccgaa 165  Q
    |||| |||||||||||||||||    
T  35258342 aaaaccaaaattttgaaccgaa 35258363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 48995737 - 48995840
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| ||||||||||| ||| ||||| |||||||||||||||||| ||||||||||| ||| ||| | || |||||||||| |||||||| |||    
T  48995737 cgaaccgaaccgtttaaggtttggaattaaccaaactgaaccaaaattatggttcggttaaccattttcttgcctattaaccgaaccaaaccaaaaccaa 48995836  T
Q  152 aatt 155  Q
    ||||    
T  48995837 aatt 48995840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 31879617 - 31879506
Alignment:
Q  54 aaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaa 153  Q
    |||||||| |||| | || |||| ||||||||||||||||||| ||||| |||| |||||||||| ||||| ||  ||||||||||||||||||  || |    
T  31879617 aaccgaaccgtttcaagtatagagctaaccgaactgaaccaaagttatggttcgattaaccgttttcttacctatgaaccgaaccgaaccaaaactaata 31879518  T
Q  154 ttttgaaccgaa 165  Q
    ||||||||||||    
T  31879517 ttttgaaccgaa 31879506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 22772549 - 22772484
Alignment:
Q  27 aagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaac 92  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  22772549 aagtgttgaaatggttcgaaataaccgaaccgaaccgtttaaggtttggaaataaccgaactgaac 22772484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9117444 - 9117328
Alignment:
Q  24 ccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgctta 123  Q
    |||||||||||||||  |||| || ||| ||||||||| |||||| |||| ||| ||||| |||||||| ||||||||| ||||||||||| |||| |||    
T  9117444 ccaaagtgttgaaatagttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaactaaaattatggttcggttaaccatttgttta 9117345  T
Q  124 catactaaccgaaccga 140  Q
    | || ||||| ||||||    
T  9117344 cttagtaaccaaaccga 9117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 23393298 - 23393162
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| || |||| |||| || | ||||| ||||  | ||| ||||||||| |||||| |||||||| ||||| ||||||||| || ||||| |||    
T  23393298 aaccgaaccgaactgaatcaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttagaagtaaccaaactgaacctaagttatggttc 23393199  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||||||||| || |||||||||| ||||    
T  23393198 ggttaaccatttgcttacctattaaccgaaccaaacc 23393162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 46171668 - 46171786
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttac-----atactaaccgaaccgaacc 143  Q
    ||||||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| |||||     |  | ||||||||||||||    
T  46171668 aaccgaaccgaaccgttttaggtatggagctaaccgaactgaaccaaagttatgtttcggttaaccgttttcttacctgtgaatcgaaccgaaccgaacc 46171767  T
Q  144 aaaatcaaaattttgaacc 162  Q
    |||| ||| ||||||||||    
T  46171768 aaaaccaatattttgaacc 46171786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 49706538 - 49706402
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| || ||||||||| || | ||||| ||||  | ||| ||||||||| |||||| |||| ||| ||||| |||| |||| || ||||| |||    
T  49706538 aaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactaaacctaagttatggttc 49706439  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||||||||| || |||||||||| ||||    
T  49706438 ggttaaccatttgcttacctattaaccgaaccaaacc 49706402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 35653402 - 35653305
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaa 146  Q
    ||||||| ||||| |||| | |||| || ||| ||||||||||||||| ||||| || |||||||| ||||||||| || |||||  |||||||||||    
T  35653402 aaccgaatcgaaccgtttcaagtttggagctatccgaactgaaccaaagttatggtttggttaaccatttgcttacctattaaccataccgaaccaaa 35653305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 39267507 - 39267410
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgttt 118  Q
    ||||| |||| ||||||||||||| ||||||||||| |||| ||||||| |||  ||| ||  |||||||| |||| ||||  |||||||||||||||    
T  39267507 gaaccgaagtattgaaatgattcggaataaccgaactgaaccgtttaagatttgaaacgaattgaactgaatcaaagttatcgttcggttaaccgttt 39267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 7573851 - 7573905
Alignment:
Q  163 gaagatttaaagtgaaagggtgatgttcctaactctaatttcaactactgacata 217  Q
    ||||||||||| ||||||||||| || | |||||||||||||||||||| |||||    
T  7573851 gaagatttaaaatgaaagggtgaggtgcgtaactctaatttcaactactcacata 7573905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 16048138 - 16048053
Alignment:
Q  79 taaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccga 164  Q
    |||||||| ||||||||| ||||| || ||||| |||||| ||| | ||  ||||||||| |||||||| ||| ||||||||||||    
T  16048138 taaccgaattgaaccaaagttatggtttggttatccgtttccttgcctatgaaccgaaccaaaccaaaaccaatattttgaaccga 16048053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 32335521 - 32335450
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaac 78  Q
    |||| ||| |||||||||  || ||||||||||||| | || |||| |||||||||||||||| ||||||||    
T  32335521 aaccaaactaaattgaactgaattgttgaaatgatttggaaaaaccaaaccgaactgtttaagatttagaac 32335450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 38935827 - 38935895
Alignment:
Q  78 ctaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaa 146  Q
    ||||| ||||| ||||||| ||||| || |||||||| ||||||||| || |||||  |||||||||||    
T  38935827 ctaactgaactaaaccaaagttatggtttggttaaccatttgcttacctattaaccataccgaaccaaa 38935895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 47996603 - 47996686
Alignment:
Q  68 aggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaa 152  Q
    |||||| ||| |||| ||||||||||||| || || ||||||||||  ||| ||||| ||  |||||||||||||| ||||||||    
T  47996603 aggtttggaattaactgaactgaaccaaagtt-tggttcggttaacaattttcttacctatgaaccgaaccgaaccgaaatcaaa 47996686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 54211 - 54047
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    ||||||||||||||| ||||||||  |||| |||||||| |||  ||||||| |||||||| || |||||||| |||||||||||||||||||||| |||    
T  54211 catattaaccgaaccgaattgaactgaagtattgaaatggttcagaataaccaaaccgaaccgtctaaggtttggaactaaccgaactgaaccaaagtta 54112  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  54111 tggttcggttaaccgtttgcttacctattaaccgaaccgaaccaaaatcaaaattttgaaccgaa 54047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9539946 - 9540104
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    ||||||||||||||| ||  ||||| ||||||||||||| |||| |||||||||||||     |||||||||| |||||||| ||||||||||||| |||    
T  9539946 catattaaccgaaccgaaccgaacctaagtgttgaaatggttcggaataaccgaaccg-----tttaaggtttggaactaactgaactgaaccaaagtta 9540040  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccga 164  Q
    || ||||||||||||||| ||| | || ||||||||||||||||||| ||||||||||||||||    
T  9540041 tggttcggttaaccgtttacttgcttattaaccgaaccgaaccaaaaccaaaattttgaaccga 9540104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 26053729 - 26053579
Alignment:
Q  20 tgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttg 119  Q
    |||||| ||||||||||||| |||| |||||  ||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  26053729 tgaaccgaagtgttgaaatggttcggaataaatgaaccgaaccgtttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccgtttg 26053630  T
Q  120 cttacata-----ctaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    ||| | ||     |||||||||||||||||||| |||||||||||||||||    
T  26053629 cttgcctattaacctaaccgaaccgaaccaaaaccaaaattttgaaccgaa 26053579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 10226774 - 10226883
Alignment:
Q  46 aataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaa 145  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||||     
T  10226774 aataaccgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaaattatggttcggttaaccgttttcttgcctattaaccgaaccgaaccag 10226873  T
Q  146 aatcaaaatt 155  Q
    || |||||||    
T  10226874 aaccaaaatt 10226883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 10903005 - 10903138
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||||||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||||||  ||    
T  10903005 ttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatgaa 10903104  T
Q  132 ccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    ||||| |||||||||| ||| |||||||||||||    
T  10903105 ccgaatcgaaccaaaaccaatattttgaaccgaa 10903138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 33691769 - 33691637
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||||||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||    
T  33691769 ttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaa 33691670  T
Q  132 ccgaaccgaaccaaaatcaaaattttgaaccga 164  Q
    |||||||||||||||| ||| ||||||||||||    
T  33691669 ccgaaccgaaccaaaaccaatattttgaaccga 33691637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 40346980 - 40347093
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||| ||| |||||||||||  ||||||||||||||||||| | |||||||| | |||||||||||||||| ||  ||||||||||||||||||     
T  40346980 aaccgaaccaaaccgtttaaggtttgaaactaaccgaactgaaccagagttatgatttgattaaccgtttgcttacctatgaaccgaaccgaaccaaaac 40347079  T
Q  149 caaaattttgaacc 162  Q
    ||| ||||||||||    
T  40347080 caatattttgaacc 40347093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 15254948 - 15255073
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| ||||||| ||||| |||| |||||| |||||||||  ||||||||||  ||||||||||||||||||||| ||||| |||||| ||||||||||    
T  15254948 gaaccgaagtgttaaaatggttcggaataactgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggtcaaccgtttgc 15255047  T
Q  121 ttacatactaaccgaaccgaaccaaa 146  Q
    ||    | ||||||||||||||||||    
T  15255048 ttggtcattaaccgaaccgaaccaaa 15255073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 42475673 - 42475789
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| |||| |||||||| |||| |||||||||||||     |||||||||| |||||||||||| ||||||||| ||||| ||||||||||| |||||    
T  42475673 gaaccgaagttttgaaatggttcggaataaccgaaccg-----tttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccatttgc 42475767  T
Q  121 ttacatactaaccgaaccgaac 142  Q
     ||| || ||||||||||||||    
T  42475768 atacctattaaccgaaccgaac 42475789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 27114944 - 27115027
Alignment:
Q  79 taaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaacc 162  Q
    |||||||||||||||||| ||||| ||||||||||| ||| ||| | || ||||||||||||||||||| ||||||||||||||    
T  27114944 taaccgaactgaaccaaagttatggttcggttaaccatttacttccctattaaccgaaccgaaccaaaaccaaaattttgaacc 27115027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 19147561 - 19147699
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata---- 127  Q
    |||||||||||||  | ||| ||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||| ||| ||||| ||        
T  19147561 ttgaaatgattcgggaaaactgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccattttcttacctatgaa 19147660  T
Q  128 -ctaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
     | |||||||||||||||||| ||| |||||||||||||    
T  19147661 ccaaaccgaaccgaaccaaaaccaatattttgaaccgaa 19147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 28734111 - 28733992
Alignment:
Q  2 atattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattat 101  Q
    |||||||||||||  ||  ||||  ||||||||||||| |||| |||||||||||| ||| ||||| | ||| |||||||||||||| ||||||| ||||    
T  28734111 atattaaccgaactgaaccgaactgaagtgttgaaatggttcggaataaccgaacc-aaccgtttaggatttggaactaaccgaactaaaccaaagttat 28734013  T
Q  102 gattcggttaaccgtttgctt 122  Q
    | || ||||||||||||||||    
T  28734012 ggtttggttaaccgtttgctt 28733992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 4885624 - 4885488
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| || ||||||||| || | ||||| ||||  | ||  ||||||||| |||||| |||| ||| ||||| ||||||||| || ||||| |||    
T  4885624 aaccgaaccgaactgaaccaaattgataaaatggttcgggaaaattgaaccgaaccgtttaaagtttggaagtaaccaaactgaacctaagttatggttc 4885525  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||||||||| || |||||||||| ||||    
T  4885524 ggttaaccatttgcttacctattaaccgaaccaaacc 4885488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 21184209 - 21184105
Alignment:
Q  20 tgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttg 119  Q
    ||||||||| || | ||||| |||| || ||| ||||||||| |||||| |||| ||| ||||| |||||||||||| ||||| ||||||||||| ||||    
T  21184209 tgaaccaaattgctaaaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttg 21184110  T
Q  120 cttac 124  Q
    |||||    
T  21184109 cttac 21184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 14333977 - 14334087
Alignment:
Q  54 aaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaa 153  Q
    |||||||| |||| |||| | || ||||| ||||||||||||| ||||| ||||||||  ||||| ||||| || | ||||||||||||||||| ||| |    
T  14333977 aaccgaaccgtttcaggtatggagctaactgaactgaaccaaagttatggttcggttactcgttttcttaccta-tgaccgaaccgaaccaaaaccaata 14334075  T
Q  154 ttttgaaccgaa 165  Q
    ||||||||||||    
T  14334076 ttttgaaccgaa 14334087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 34360455 - 34360538
Alignment:
Q  78 ctaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaac 161  Q
    |||| |||||||||||||| ||||  ||||||||||||||| ||||| ||  |||||||||||||||||| ||| |||||||||    
T  34360455 ctaatcgaactgaaccaaagttatagttcggttaaccgttttcttacctataaaccgaaccgaaccaaaaccaatattttgaac 34360538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 36368557 - 36368644
Alignment:
Q  78 ctaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    |||| ||||| |||||||| ||||| ||||||||||||||| ||||  ||  |||||||||||||||||| ||| |||||||||||||    
T  36368557 ctaatcgaaccgaaccaaagttatggttcggttaaccgttttcttatctatgaaccgaaccgaaccaaaaccaatattttgaaccgaa 36368644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 33238175 - 33238112
Alignment:
Q  80 aaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||| |||||||||||| ||||| ||| ||||||||||||||| |||| |||||||||||||||    
T  33238175 aaccaaactgaaccaaagttatggttcagttaaccgtttgcttgcatattaaccgaaccgaacc 33238112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 19127339 - 19127421
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaacc 114  Q
    |||||||||||||  | ||||||||||||| |||| |||| | || ||||||||||||||||||| || |  |||||||||||    
T  19127339 ttgaaatgattcgggaaaaccgaaccgaaccgttttaggtatggagctaaccgaactgaaccaaagttgttgttcggttaacc 19127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 40614657 - 40614727
Alignment:
Q  53 gaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgctta 123  Q
    ||||||||| |||||| |||| ||| ||||| |||||||||||| ||||| ||||||||||| ||| ||||    
T  40614657 gaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttactta 40614727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 13947146 - 13947194
Alignment:
Q  85 aactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc 133  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| |||||    
T  13947146 aactgaaccaaagttatggttcggttaaccatttgcttacatattaacc 13947194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27114898 - 27114957
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaac 61  Q
    ||||||||||||||| || ||||||||| |||||||||| |||| ||||||||||| ||||    
T  27114898 catattaaccgaaccgaactgaaccaaa-tgttgaaatggttcggaataaccgaactgaac 27114957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 8259158 - 8259099
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaa 91  Q
    |||||||| || || | ||||||||| ||| ||||||||||| |||||||||||||||||    
T  8259158 ttgaaatggtttgagaaaaccgaaccaaaccgtttaaggtttggaactaaccgaactgaa 8259099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 17564501 - 17564444
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggt 109  Q
    |||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||    
T  17564501 cgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggt 17564444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 33639554 - 33639388
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    ||||||||||||||||||  ||||||||||||||||||| |||| ||||| ||| |||||| ||||||||||| ||| |||||||| ||||||||| |||    
T  33639554 catattaaccgaaccaaaccgaaccaaagtgttgaaatggttcggaataatcgagccgaaccgtttaaggttttgaattaaccgaaatgaaccaaagtta 33639455  T
Q  101 tgattcggttaaccgtttgcttacatactaac-----cgaaccgaaccaaaatcaaaattttgaacc 162  Q
    || |||| |||||||||||||| | || ||||     |||||||||||||||| |||||||||||||    
T  33639454 tggttcgattaaccgtttgcttccctattaaccgaatcgaaccgaaccaaaattaaaattttgaacc 33639388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 50303330 - 50303197
Alignment:
Q  28 agtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata 127  Q
    |||||||||||| || | |||||||||||||||| |||||||||||  | ||| ||||||||||||||| ||||| ||||||||||||||||||| | ||    
T  50303330 agtgttgaaatggtttggaataaccgaaccgaaccgtttaaggtttgaagctatccgaactgaaccaaagttatgtttcggttaaccgtttgcttgccta 50303231  T
Q  128 ctaaccgaaccgaaccaaaatcaaaattttgaac 161  Q
     |||||||||||| |||||| |||||||||||||    
T  50303230 ttaaccgaaccgatccaaaaccaaaattttgaac 50303197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 55325190 - 55325333
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| ||||||||||||| |||| ||||||||||| |||| |||||||||||  |||||||| |||||||||||| ||||| ||||  |||||||||||    
T  55325190 gaaccgaagtgttgaaatggttcggaataaccgaactgaaccgtttaaggtttgaaactaacctaactgaaccaaagttatggttcgtctaaccgtttgc 55325289  T
Q  121 ttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    || | |  ||||||||||||||||||| |||||||||||||||||    
T  55325290 ttgcct-ttaaccgaaccgaaccaaaaccaaaattttgaaccgaa 55325333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 32863685 - 32863566
Alignment:
Q  22 aaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgct 121  Q
    |||| ||||||||||||| |||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||     
T  32863685 aaccgaagtgttgaaatggttcggaataaccaaaccgaaccgttcaaggtttggaactaaccgaactgaaccaaagttatggttcggttaaccatttgca 32863586  T
Q  122 tacatactaaccgaaccgaa 141  Q
    ||  || |||||||||||||    
T  32863585 tatctattaaccgaaccgaa 32863566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 50328466 - 50328344
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| || |||||||||| |||| |||||||||||||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||||||||||||      
T  50328466 gaaccgaaatgttgaaatggttcggaataaccgaaccgaaccgtttaagatttagaacgaactgaactgaaccaaagttatggttcggttaaccgtttcg 50328367  T
Q  121 ttacatactaaccgaaccgaacc 143  Q
    | || | ||||||||||||||||    
T  50328366 taacttgctaaccgaaccgaacc 50328344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 13857101 - 13857214
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||||||| |||| |||| |  ||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||||||||| ||||||||     
T  13857101 aaccgaaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccaaaccaaaac 13857200  T
Q  149 caaaattttgaacc 162  Q
    ||| ||||||||||    
T  13857201 caatattttgaacc 13857214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 40929339 - 40929482
Alignment:
Q  27 aagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacat 126  Q
    ||||||||||||  || | ||||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||||| | | |    
T  40929339 aagtgttgaaatcgtttggaataatcgaactgaaccgtttaaggtttggaactaaccgaactgaaccaaagttatggttcggttaactgtttgcgtgcct 40929438  T
Q  127 ----act-aaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
        ||| ||||||||||||| |||| |||||||||||||||||    
T  40929439 gttaactgaaccgaaccgaactaaaaccaaaattttgaaccgaa 40929482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 50308995 - 50309130
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| ||  ||||| || | |||||||| ||||||| ||||||||||||| |||| |||| | || |||| |||||||||||||| ||||| |||    
T  50308995 aaccgaaccgaaccgaaccgaaattttgaaatggttcgaaa-aaccgaaccgaaccgttttaggtatggagctaatcgaactgaaccaaagttatgtttc 50309093  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||||||| ||||| ||  ||||||||||||||    
T  50309094 ggttaaccgttttcttacttatgaaccgaaccgaacc 50309130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 50875599 - 50875472
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| ||||||||||||| |||| |||||||||||| ||   |||||| |||||||| ||| ||||||||||||| ||||  |||||||||||||||      
T  50875599 gaaccgaagtgttgaaatggttcggaataaccgaaccaaatcatttaagatttagaacgaactgaactgaaccaaagttatagttcggttaaccgtttcg 50875500  T
Q  121 ttacatactaaccgaaccgaaccaaaat 148  Q
    | |  | |||||||||||||||||||||    
T  50875499 taatttgctaaccgaaccgaaccaaaat 50875472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 5931171 - 5931254
Alignment:
Q  82 ccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| ||  ||||||||||||||||||  || |||||||||||||    
T  5931171 ccgaactgaaccaaagttataattcggttaaccgttttcttacctatgaaccgaaccgaaccaaaactaatattttgaaccgaa 5931254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 25639527 - 25639397
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaact-----gtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccg 115  Q
    ||||| || |||||||||| ||||||||||  ||||||||||     |||||||||||  || |||||||||||||||||| ||||| |||||||||||     
T  25639527 gaaccgaattgttgaaatggttcgaaataattgaaccgaactaaaccgtttaaggtttgaaattaaccgaactgaaccaaagttatggttcggttaacca 25639428  T
Q  116 tttgcttacatactaaccgaaccgaaccaaa 146  Q
    ||||||| | || |||  |||||||||||||    
T  25639427 tttgcttgcttattaattgaaccgaaccaaa 25639397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 40293047 - 40292911
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||| | || ||||||||| || | ||||| ||||  | ||| ||||||||| |||||| |||| ||| ||||| ||||||||| || ||||| |||    
T  40293047 aaccgaatcgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaacctaagttatggttc 40292948  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||||||||| || |||||||||| ||||    
T  40292947 ggttaaccatttgcttacctattaaccgaaccaaacc 40292911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 5938130 - 5938048
Alignment:
Q  83 cgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| ||  |||  ||||||||||||| ||| |||||||||||||    
T  5938130 cgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaactaaaccgaaccaaaaccaatattttgaaccgaa 5938048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 10223102 - 10222989
Alignment:
Q  57 cgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata-----ctaaccgaaccgaaccaaaatcaa 151  Q
    ||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||  ||     | || ||||||||||||||| |||    
T  10223102 cgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttatctaagaaccaaatcgaaccgaaccaaaaccaa 10223003  T
Q  152 aattttgaaccgaa 165  Q
     |||||||||||||    
T  10223002 tattttgaaccgaa 10222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 13840770 - 13840850
Alignment:
Q  53 gaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc 133  Q
    ||||||||| ||| || |||| ||| ||||| |||||||||||| ||||| ||||||||||| |||| |||| || |||||    
T  13840770 gaaccgaaccgttaaaagtttggaaataaccaaactgaaccaaagttatggttcggttaaccatttgtttacctattaacc 13840850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 44774066 - 44773975
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgctta 123  Q
    |||||||| |||| || |||||||||||||  ||| | |||| ||  |||||||||||||||||| ||||| ||  ||||||| ||||||||    
T  44774066 ttgaaatggttcgcaaaaaccgaaccgaacaattttaagtttggagttaaccgaactgaaccaaagttatggtttagttaaccatttgctta 44773975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 18021856 - 18021762
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    ||||||||||||| |||| | | || || ||||||||||| ||||||| ||||| || |||||||| |||| |||| || |||||  ||||||||    
T  18021856 aaccgaaccgaaccgttttaaggttggagctaaccgaactcaaccaaagttatggtttggttaaccatttgtttacctattaaccataccgaacc 18021762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 44416541 - 44416405
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||  ||| ||| |||| || ||||||| |||| || ||| |||||||||  ||||| || | ||| ||| | ||||||||||||  |||| ||     
T  44416541 aaccgaactgaatcgaatcaaattgctgaaatggttcggaaaaactgaaccgaaccatttaaagtctggaagtaatcaaactgaaccaaagctatggttt 44416442  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||| ||||| || ||||| |||||||||    
T  44416441 ggttaaccatttacttacctattaaccaaaccgaacc 44416405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8550733 - 8550599
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| ||||||||||||| || |||||||||||||||||| |||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||||     
T  8550733 gaaccgaagtgttgaaatggtttgaaataaccgaaccgaaccgtttaaggtttgaaactaaccgaactgaaccaaagttatggttcggttaaccgtttgt 8550634  T
Q  121 ttacatactaaccgaaccgaaccaaaatcaaaatt 155  Q
    || | || | ||| ||||||||||||| |||||||    
T  8550633 ttgcctatttaccaaaccgaaccaaaaccaaaatt 8550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 11353684 - 11353827
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||| ||||||||||||| || | |||||||||||||     || | ||||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  11353684 gaaccgaagtgttgaaatggtttggaataaccgaaccg-----ttcatggtttggaactaaccgaactgaaccaaagttatggttcggttaaccgtttgc 11353778  T
Q  121 ttacatactaaccg----aaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    || | || ||||||    ||||||||||||| |||||||||||||||||    
T  11353779 ttgcctattaaccgaaccaaccgaaccaaaaccaaaattttgaaccgaa 11353827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 46400048 - 46400167
Alignment:
Q  21 gaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgc 120  Q
    ||||||||||||||||||| |||| || ||| ||||||||| |||||| |||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||    
T  46400048 gaaccaaagtgttgaaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttgc 46400147  T
Q  121 ttacatactaaccgaaccga 140  Q
    |||| || ||||| ||||||    
T  46400148 ttacctattaaccaaaccga 46400167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 35086453 - 35086539
Alignment:
Q  79 taaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||| ||  |||||||| ||||||||||||| |||||||||||||    
T  35086453 taaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaactgaaccaaaatcaatattttgaaccgaa 35086539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 45920175 - 45920042
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||| ||| ||||| |||| |||| | || ||||||||||||||||||| ||||| || |||||||||||| ||||| ||  ||    
T  45920175 ttgaaatggttcgggaaaactgaatcgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttaggttaaccgttttcttacctatgaa 45920076  T
Q  132 ccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    |||||||||||||||| ||| |||||||||||||    
T  45920075 ccgaaccgaaccaaaaccaatattttgaaccgaa 45920042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 32030418 - 32030300
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata-----ctaaccgaaccgaaccaaa 146  Q
    ||||||||||  |||| |||||  ||||| ||||||||||||||| ||||| |||| |||||||||||||||| ||     | |||||||||||||||||    
T  32030418 cgaaccgaaccatttagggtttgaaactatccgaactgaaccaaagttatggttcgattaaccgtttgcttacctattagccaaaccgaaccgaaccaaa 32030319  T
Q  147 atcaaaattttgaaccgaa 165  Q
    | |||||||||||||||||    
T  32030318 accaaaattttgaaccgaa 32030300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 45067652 - 45067526
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||| ||||||||| |||| |||| |  | ||||||||||||||||||| ||||| ||||||||||||||| ||||||||  ||    
T  45067652 ttgaaatggttcgggaaaactgaaccgaaccgtttcaggtatgcagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatgaa 45067553  T
Q  132 ccgaaccgaaccaaaatcaaaattttg 158  Q
    |||||||||| ||||| ||| ||||||    
T  45067552 ccgaaccgaatcaaaaccaatattttg 45067526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 31845141 - 31845249
Alignment:
Q  35 aaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccg 134  Q
    ||||| |||| ||||| |||||||||| |||||| |||| ||| ||||| |||||||||||| ||||| ||||||||||| ||||||||| || |||||     
T  31845141 aaatgtttcggaataatcgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacctattaacca 31845240  T
Q  135 aaccgaacc 143  Q
    ||| |||||    
T  31845241 aactgaacc 31845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 40474411 - 40474500
Alignment:
Q  54 aaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||| |||||||| |||||  || ||||||||||||||||||| ||||| || |||||||| ||||||||| || |||||  ||||||||    
T  40474411 aaccaaactgtttcaggttgtgagctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacttattaaccataccgaacc 40474500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 33382475 - 33382364
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||||||||||||  |||| | ||||  | ||||||||||||||||||| ||||| || |||||||| ||||||||| || |||    
T  33382475 ttgaaatggttcgggaaaaccgaaccgaatcgtttcaagtttgaagctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacctattaa 33382376  T
Q  132 ccgaaccgaacc 143  Q
    ||  ||||||||    
T  33382375 ccataccgaacc 33382364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 28681887 - 28681968
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc 133  Q
    ||||| |||| |||| | |||| || ||||||||||||||||||| ||||| || |||||||| ||||||||| || |||||    
T  28681887 cgaactgaaccgtttcaagtttggatctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacctattaacc 28681968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 27856572 - 27856647
Alignment:
Q  90 aaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    ||||||| ||||| ||| ||||||||||| ||||  ||  || ||||||||||||||| ||| |||||||||||||    
T  27856572 aaccaaagttatggttcagttaaccgttttcttatctatgaatcgaaccgaaccaaaaccaatattttgaaccgaa 27856647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 32745894 - 32746005
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| |||| || ||  ||||||||| |||| | |||| || ||||||||||||||||||| ||||| || || ||||| ||| ||||| || |||    
T  32745894 ttgaaatggttcggaaaaattgaaccgaaccgttttaagtttggagctaaccgaactgaaccaaagttatggtttggctaaccatttacttacctattaa 32745993  T
Q  132 ccgaaccgaacc 143  Q
    ||  ||||||||    
T  32745994 ccataccgaacc 32746005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 23111304 - 23111454
Alignment:
Q  12 aaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggtta 111  Q
    |||||||  ||||| ||||||||||||| |||| |||||||||||||||| |||| | |||| ||||||||||||||||| |||| ||||| ||||||||    
T  23111304 aaccaaaccgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccgtttgatgtttggaactaaccgaactgaatcaaagttatggttcggtta 23111403  T
Q  112 accgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaacc 162  Q
    | | |||||||   || ||||||||||||||||||| ||||||||||||||    
T  23111404 atcatttgcttgtctattaaccgaaccgaaccaaaaccaaaattttgaacc 23111454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1801049 - 1800888
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    ||||||||||||| | || |||||| || |||| ||||| |||  ||||| |||| ||||||||||||||||| ||||||| |||||||||||||| |||    
T  1801049 catattaaccgaatcgaactgaaccgaaatgttaaaatggttcagaataatcgaatcgaactgtttaaggtttggaactaatcgaactgaaccaaagtta 1800950  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaacc 162  Q
    |  ||| |||||||||||  || | || ||||||||||||| ||||| ||||||||||||||    
T  1800949 tcgttcagttaaccgtttatttgcctattaaccgaaccgaatcaaaaccaaaattttgaacc 1800888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 12356458 - 12356338
Alignment:
Q  27 aagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacat 126  Q
    ||||||||||||| |||| | |||||||||||||| ||||||||||| ||| |||||||| ||||||||| ||||| || ||||||| ||||||||   |    
T  12356458 aagtgttgaaatggttcggagtaaccgaaccgaaccgtttaaggtttggaaataaccgaattgaaccaaagttatggtttggttaacagtttgcttggct 12356359  T
Q  127 actaaccgaaccgaaccaaaa 147  Q
    | | |||||||||||||||||    
T  12356358 attgaccgaaccgaaccaaaa 12356338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 17154388 - 17154272
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||| ||| |||| |||| | ||  |||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||||||||||||||||||     
T  17154388 aaccgaaccaaaccgtttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaaccaaaac 17154289  T
Q  149 caaaattttgaaccgaa 165  Q
    ||| |||||||||||||    
T  17154288 caatattttgaaccgaa 17154272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 33702599 - 33702710
Alignment:
Q  54 aaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaa 153  Q
    |||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||| ||| ||||| ||  |||||||||||||||||| ||| |    
T  33702599 aaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccattttcttacctaagaaccgaaccgaaccaaaaccaata 33702698  T
Q  154 ttttgaaccgaa 165  Q
    ||||||||||||    
T  33702699 ttttgaaccgaa 33702710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 8636239 - 8636150
Alignment:
Q  57 cgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaa 146  Q
    ||||| ||||||||||| ||||||||||| |||||||||| |||||  |||||||||||||||||||| || ||||||||| ||||||||    
T  8636239 cgaaccgtttaaggtttggaactaaccgagctgaaccaaagttatggctcggttaaccgtttgcttacctattaaccgaactgaaccaaa 8636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 29092864 - 29092751
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||| ||||||||| ||||  ||  |||| ||||||||||||| |||    
T  29092864 cgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggataaccgttttcttatctatgaaccaaaccgaaccaaaaccaa 29092765  T
Q  152 aattttgaaccgaa 165  Q
     |||||||||||||    
T  29092764 tattttgaaccgaa 29092751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 27596508 - 27596602
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    ||||||||||||| |||| | |||   | ||||||||||||||||||||||||| || |||||||| ||||||||| || |||||  ||||||||    
T  27596508 aaccgaaccgaaccgtttcatgttggcagctaaccgaactgaaccaaaattatggtttggttaaccatttgcttacctattaaccataccgaacc 27596602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 29398031 - 29397928
Alignment:
Q  53 gaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaa 152  Q
    |||| ||||||||||| |||| ||| ||||| |||||||| | | ||||| ||||||||||| |||| |||| || ||||| |||||||||||||| ||     
T  29398031 gaactgaactgtttaaagtttggaagtaaccaaactgaacgaca-ttatggttcggttaaccatttgtttacctattaaccaaaccgaaccaaaataaat 29397933  T
Q  153 atttt 157  Q
    |||||    
T  29397932 atttt 29397928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 5270558 - 5270420
Alignment:
Q  27 aagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacat 126  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||| ||||| ||||||| ||||| |||  ||||||||||||||   |    
T  5270558 aagtgttgaaatggttcggaataactgaaccgaactgtttaaggtatggaactaactgaactaaaccaaagttatggttcaattaaccgtttgcttgtct 5270459  T
Q  127 actaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    | ||||| |||||||||||||||||||||||||||||||    
T  5270458 attaaccaaaccgaaccaaaatcaaaattttgaaccgaa 5270420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 31365529 - 31365642
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| |||| | || | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||| ||||||||||||||||||    
T  31365529 cgaaccgaaccgtttcaagtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaactgaaccgaaccaaaatcaa 31365628  T
Q  152 aattttgaaccgaa 165  Q
     |||||||||||||    
T  31365629 tattttgaaccgaa 31365642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 2154095 - 2153983
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||||||| || | |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  || |||||||||||||||     
T  2154095 aaccgaaccgaaccgtgttaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaatcgaaccgaaccaaaac 2153996  T
Q  149 caaaattttgaac 161  Q
     || |||||||||    
T  2153995 aaatattttgaac 2153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 43177090 - 43177226
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| || ||||||||| || | ||||| ||||  | ||| ||||||||| |||||| |||| ||| ||| | ||||||||| || ||||| |||    
T  43177090 aaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaatcaaactgaacctaagttatggttc 43177189  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||||| ||||||||| || |||||||||| ||||    
T  43177190 ggttaaccatttgcttacctattaaccgaaccaaacc 43177226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 25396438 - 25396524
Alignment:
Q  80 aaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc-----gaaccgaaccaaaatcaaaattttgaac 161  Q
    ||||||||||||  ||| ||||||||||||||||||||| ||| | || |||||     ||||||||||||||||||||||||||||    
T  25396438 aaccgaactgaattaaagttatgattcggttaaccgtttacttgcttattaaccaaactgaaccgaaccaaaatcaaaattttgaac 25396524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36669843 - 36669912
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaagg 70  Q
    ||||||||||||||| ||  ||||| || |||||||||| || |||||||||||||| ||| ||||||||    
T  36669843 catattaaccgaaccgaaccgaaccgaaatgttgaaatggtttgaaataaccgaaccaaaccgtttaagg 36669912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 33062173 - 33062037
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    ||||||||||||||  ||  |||||||||| |||||||| |||| ||||||||||| |||| ||||||| |||  |||||||||||||||||||||||||    
T  33062173 catattaaccgaactgaaccgaaccaaagtattgaaatgtttcggaataaccgaactgaaccgtttaagatttgaaactaaccgaactgaaccaaaatta 33062074  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaac 137  Q
    || |||||||||| |||||||| | || |||||||||    
T  33062073 tggttcggttaactgtttgcttgcctattaaccgaac 33062037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 3523147 - 3523305
Alignment:
Q  7 aaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattc 106  Q
    ||||||||| ||| ||||| || | |||||||| ||||  | || |||||| ||| |||| |||| | || ||||||||||||||||||| ||||| |||    
T  3523147 aaccgaaccgaatcgaaccgaaattttgaaatggttcgggaaaatcgaaccaaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttc 3523246  T
Q  107 ggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    |||||||||||| ||||| ||  ||| ||||||||||| || ||| |||||||||||||    
T  3523247 ggttaaccgttttcttacctatgaactgaaccgaaccataaccaatattttgaaccgaa 3523305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 42545778 - 42545701
Alignment:
Q  80 aaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaatttt 157  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||| ||||    
T  42545778 aaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcatattaaccgaaccgaaccaaaaccaaattttt 42545701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 32955809 - 32955930
Alignment:
Q  22 aaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgct 121  Q
    ||||||| | |||||||| |||| || ||||||||||||| |||| |||||  || |||||||||||||| |||| ||||| || |||||| | ||||||    
T  32955809 aaccaaaattttgaaatggttcggaaaaaccgaaccgaaccgtttcaggttgggagctaaccgaactgaatcaaagttatggtttggttaatcatttgct 32955908  T
Q  122 tacatactaaccgaaccgaacc 143  Q
    ||| || |||||  ||||||||    
T  32955909 tacctattaaccataccgaacc 32955930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 31508561 - 31508461
Alignment:
Q  33 tgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaac 132  Q
    ||||||| |||| || ||| |||| ||||||||||| |||| ||| ||||| |||||||||||| ||||| ||| ||||||| ||||||||| || ||||    
T  31508561 tgaaatggttcggaaaaactgaactgaactgtttaaagtttggaagtaaccaaactgaaccaaagttatggttctgttaaccatttgcttacctattaac 31508462  T
Q  133 c 133  Q
    |    
T  31508461 c 31508461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 26818460 - 26818347
Alignment:
Q  57 cgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata-----ctaaccgaaccgaaccaaaatcaa 151  Q
    ||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||  ||     | || ||||||||||||||| |||    
T  26818460 cgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttatctaagaaccaaatcgaaccgaaccaaaaccaa 26818361  T
Q  152 aattttgaaccgaa 165  Q
     |||||||||||||    
T  26818360 tattttgaaccgaa 26818347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 31069152 - 31069280
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| |||| || || ||||| ||||  ||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||        
T  31069152 ttgaaatggttcggaaaaatcgaactgaaccatttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttaccta---- 31069247  T
Q  132 ccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
      |||||||| ||||| ||| |||||||||||||    
T  31069248 -tgaaccgaatcaaaaccaatattttgaaccgaa 31069280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 8465186 - 8465238
Alignment:
Q  91 accaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    |||||| ||||||||||||||||||||||||||| || ||| | |||||||||    
T  8465186 accaaagttatgattcggttaaccgtttgcttacctattaatcaaaccgaacc 8465238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 28747606 - 28747671
Alignment:
Q  78 ctaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    ||||||||||||||| ||| ||||| || |||||||| ||||||||| || |||||  ||||||||    
T  28747606 ctaaccgaactgaactaaagttatggtttggttaaccatttgcttacctattaaccataccgaacc 28747671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 24186669 - 24186802
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||  | ||||||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||    
T  24186669 ttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaa 24186768  T
Q  132 ccgaaccgaaccaaaatcaaaattttgaaccgaa 165  Q
    | |||||||||||||| ||| |||||||||||||    
T  24186769 ctgaaccgaaccaaaaccaatattttgaaccgaa 24186802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 34393662 - 34393775
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||| ||||||||||||||||||    
T  34393662 cgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatgaactgaaccgaaccaaaatcaa 34393761  T
Q  152 aattttgaaccgaa 165  Q
     |||||||||||||    
T  34393762 tattttgaaccgaa 34393775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 34387649 - 34387533
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||| ||||||||||||||     
T  34387649 aaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaactgaaccgaaccaaaac 34387550  T
Q  149 caaaattttgaaccgaa 165  Q
    ||| |||||||||||||    
T  34387549 caatattttgaaccgaa 34387533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 34588966 - 34588858
Alignment:
Q  54 aaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaa 153  Q
    |||||||| |||| |||| |  ||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  |||||||||||||||||| ||| |    
T  34588966 aaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaaccaaaaccaata 34588867  T
Q  154 ttttgaacc 162  Q
    |||||||||    
T  34588866 ttttgaacc 34588858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 27842649 - 27842540
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaa 151  Q
    |||||||||| |||| |||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||| |||||||||||||| |||    
T  27842649 cgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatgaactgaaccgaaccaaaaccaa 27842550  T
Q  152 aattttgaac 161  Q
     |||||||||    
T  27842549 tattttgaac 27842540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 790106 - 790217
Alignment:
Q  32 ttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaa 131  Q
    |||||||| ||||| | || |||||||||| |||| |||| | ||  |||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||    
T  790106 ttgaaatggttcgagaaaatcgaaccgaaccgtttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaa 790205  T
Q  132 ccgaaccgaacc 143  Q
    ||||||||||||    
T  790206 ccgaaccgaacc 790217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 51236406 - 51236288
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacata-----ctaaccgaaccgaacc 143  Q
    ||||||||||||| |||| |||| | || |||||| |||||||||||| ||||| |||||||||| |||| ||||| ||     | ||||||||||||||    
T  51236406 aaccgaaccgaaccgtttcaggtatggacctaaccaaactgaaccaaagttatggttcggttaactgttttcttacctatgaaccgaaccgaaccgaacc 51236307  T
Q  144 aaaatcaaaattttgaacc 162  Q
    |||||||| ||||||||||    
T  51236306 aaaatcaatattttgaacc 51236288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 22871275 - 22871391
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaat 148  Q
    ||||||| ||||| |||| |||| ||||  ||||  |||||||||||| ||||| ||||||||||||||| ||||| ||  ||  ||||||||||||||     
T  22871275 aaccgaatcgaaccgttttaggtatagagttaactaaactgaaccaaagttatggttcggttaaccgttttcttacctatgaatagaaccgaaccaaaac 22871374  T
Q  149 caaaattttgaaccgaa 165  Q
    ||| |||||||||||||    
T  22871375 caatattttgaaccgaa 22871391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 8065386 - 8065455
Alignment:
Q  92 ccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaaccaaaatcaaaattttgaac 161  Q
    ||||| ||||| ||||||||||||||| ||||| ||  |||||||||||||||||||||| |||||||||    
T  8065386 ccaaagttatggttcggttaaccgttttcttacttatgaaccgaaccgaaccaaaatcaatattttgaac 8065455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 17305156 - 17305062
Alignment:
Q  49 aaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    ||||||||||||| |||| | || |  |||||||||||| |||||||| ||||| ||||||||||||||| ||||| ||  |||||||| |||||    
T  17305156 aaccgaaccgaaccgtttcatgtatgcaactaaccgaaccgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaactgaacc 17305062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33376507 - 33376644
Alignment:
Q  1 catattaaccgaaccaaattgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaatta 100  Q
    |||||||| |||||| ||  |||  |||||||||||||| |||  ||||||||||  |||||||||||| ||| |||||||  ||| ||||||||         
T  33376507 catattaatcgaaccgaaccgaattaaagtgttgaaatggttcagaataaccgaattgaactgtttaagttttggaactaattgaattgaaccaa----- 33376601  T
Q  101 tgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    || ||||||||| | ||||||| | || |||||||||||||||    
T  33376602 tggttcggttaatcatttgcttgcctattaaccgaaccgaacc 33376644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 32000582 - 32000727
Alignment:
Q  20 tgaaccaaagtgttgaaatgattcgaaataaccgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttg 119  Q
    |||||| || |||||||||| ||   || ||| ||||||||| ||||||| ||| |||||| | |||||||| |||| ||||| |||| |||| | ||||    
T  32000582 tgaaccgaattgttgaaatggtttagaaaaactgaaccgaaccgtttaagatttggaactatctgaactgaatcaaagttatggttcgattaatcatttg 32000681  T
Q  120 cttacatactaaccgaacc-----gaaccaaaatcaaaattttgaa 160  Q
     |||| || ||||||||||     ||||||||||||| ||||||||    
T  32000682 tttacctattaaccgaaccaaaccgaaccaaaatcaatattttgaa 32000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 32132108 - 32132027
Alignment:
Q  52 cgaaccgaactgtttaaggtttagaactaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaacc 133  Q
    |||||||||| |||| | |||| |||||||||||| ||| ||||| ||||| || |||||||| ||||||||| || |||||    
T  32132108 cgaaccgaaccgtttcaagtttggaactaaccgaattgagccaaagttatggtttggttaaccatttgcttacctattaacc 32132027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 7447 - 7382
Alignment:
Q  78 ctaaccgaactgaaccaaaattatgattcggttaaccgtttgcttacatactaaccgaaccgaacc 143  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||  ||||||||||||||    
T  7447 ctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatgaaccgaaccgaacc 7382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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