View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_20 (Length: 338)
Name: NF20235_low_20
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 25372027 - 25372330
Alignment:
| Q |
20 |
acattgcacatattctttacttcgacgacttttccatcaacatctgcctctgacattgatgatgactttcttctttgagaagatgtgacactagggaatg |
119 |
Q |
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| T |
25372027 |
acattgcacatattctttacttcgacaacttttccatcaacatctgcctctgacattgatgatgactttcttctttgagaagatgtgacactagggaatg |
25372126 |
T |
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| Q |
120 |
ttatccatgaaggtgctctaagctcaaaccttggatcctcaatttcagaaactgacatatttgaagatctttgagatggtttcttgtgcaatctattact |
219 |
Q |
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| T |
25372127 |
ttatccatgaaggtgctctaagctcaaaccttggatcctcaatttcagaaactgacatatttgaagatctttgagatggtttcttgtgcaatctattact |
25372226 |
T |
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| Q |
220 |
tcctaaaacaacctcagaaggtaaaattggttgatcaatgcatggactgcccattaacacagcaagacctctttccaaagctgttgttactttgtccatt |
319 |
Q |
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| T |
25372227 |
tcctaaaacaacctcagaaggtaaaattggttgatcaatgcatggactgcccattaacacagcaagacctctttccaaagctgttgttactttgtccatt |
25372326 |
T |
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| Q |
320 |
gaag |
323 |
Q |
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|||| |
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| T |
25372327 |
gaag |
25372330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 323
Target Start/End: Complemental strand, 42357508 - 42357253
Alignment:
| Q |
83 |
gactttcttctttgagaagatgtgacactagggaatgttatccatgaaggtgctctaagctcaaaccttggatcctca---------------atttcag |
167 |
Q |
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|||||||||||||||||||| || ||||| || || |||||||| ||||||||||||| |||||||||| |||| ||| ||||| | |
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| T |
42357508 |
gactttcttctttgagaagaagtaacacttggaaaagttatccaagaaggtgctctaaactcaaacctttgatcttcaccttcgactacatcgatttctg |
42357409 |
T |
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| Q |
168 |
aaactgacatatttgaagatctttgagatggtttcttgtgcaatctattacttcctaaaacaacctcagaaggtaaaattggttgatcaatgcatggact |
267 |
Q |
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|| | ||| ||||||||| |||||||||| |||||| |||| |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||| |
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| T |
42357408 |
aagccgaccgatttgaagacctttgagatgttttcttatgcattctattacttcctagaacaacctcagttggcaaaattggttgatcaatacaaggact |
42357309 |
T |
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| Q |
268 |
gcccattaacacagcaagacctctttccaaagctgttgttactttgtccattgaag |
323 |
Q |
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|||||||||| || | | ||||||||||| ||||||||||||||||||||||| |
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| T |
42357308 |
tcccattaacattgctaaagctctttccaaacttgttgttactttgtccattgaag |
42357253 |
T |
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