View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_low_21 (Length: 336)

Name: NF20235_low_21
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_low_21
NF20235_low_21
[»] chr7 (2 HSPs)
chr7 (15-76)||(25248654-25248715)
chr7 (220-300)||(32803684-32803765)
[»] chr4 (5 HSPs)
chr4 (220-326)||(21392567-21392671)
chr4 (221-300)||(20381349-20381428)
chr4 (220-334)||(27051046-27051160)
chr4 (221-280)||(39158103-39158162)
chr4 (223-299)||(52263874-52263950)
[»] chr8 (3 HSPs)
chr8 (223-300)||(10902705-10902781)
chr8 (222-280)||(15716990-15717048)
chr8 (248-300)||(37133857-37133909)
[»] chr5 (2 HSPs)
chr5 (220-280)||(19982000-19982060)
chr5 (269-335)||(31683454-31683521)
[»] chr2 (1 HSPs)
chr2 (220-280)||(1416053-1416113)
[»] chr6 (2 HSPs)
chr6 (220-333)||(17551339-17551453)
chr6 (220-280)||(2242036-2242096)
[»] chr3 (2 HSPs)
chr3 (223-335)||(9311040-9311153)
chr3 (248-300)||(42672829-42672881)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 25248715 - 25248654
Alignment:
Q  15 attattataaggaacgttgatggaaacgtaagaatgaggacttgggtttgagttctaaaaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25248715 attattataaggaacgttgatggaaacgtaagaatgaggacttgggtttgagttctaaaaac 25248654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 32803684 - 32803765
Alignment:
Q  220 aaagagaaatgatatttaaattatca-tattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttac 300  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||||||  ||| | ||||| ||| ||||| |||||||||    
T  32803684 aaagagaaatgatatttaaataatcatttttttgatagtttttgtaacaattttctttctcatatttatattatgtttttac 32803765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 21392567 - 21392671
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttaccttttcttctgattgtttt 319  Q
    ||||||||||||||||| ||  ||||| || | ||||||||||| |||||||| ||| ||| ||| ||||| ||||||||| || || ||| ||||||||    
T  21392567 aaagagaaatgatatttgaacaatcattttgtaataatttttgtgacagctttctctttcatatttatattatgtttttactttatc-tct-attgtttt 21392664  T
Q  320 ggttttg 326  Q
    |||||||    
T  21392665 ggttttg 21392671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 20381349 - 20381428
Alignment:
Q  221 aagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttac 300  Q
    ||||||||| |||||| ||  ||||| |||||||||||||| ||||| |||| |||||||   ||| |||||||||||||    
T  20381349 aagagaaattatatttgaacaatcattttttgataatttttataacaactttctctctcatgctcacattgtgtttttac 20381428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 27051160 - 27051046
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttaccttttcttctgattgtttt 319  Q
    ||||||||||||||||||||  | ||| |||| ||||||||||| | | |||| ||||||| | ||| ||| | |||||||||| |||  | ||||||||    
T  27051160 aaagagaaatgatatttaaacaaccatttttt-ataatttttgtgataactttctctctcatactcacattatctttttaccttctctctttattgtttt 27051062  T
Q  320 gg-ttttgtgtcaata 334  Q
    || |||||||||||||    
T  27051061 ggtttttgtgtcaata 27051046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 39158103 - 39158162
Alignment:
Q  221 aagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctca 280  Q
    |||||||||||||||| ||  ||||| |||||||||||||||| ||| |||| |||||||    
T  39158103 aagagaaatgatatttgaacaatcattttttgataatttttgtgacaactttctctctca 39158162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 52263950 - 52263874
Alignment:
Q  223 gagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgttttta 299  Q
    |||| |||||||||| |  ||||| |||||||||||||| ||||| |||| ||||||| | ||||||| | ||||||    
T  52263950 gagacatgatatttatacaatcattttttgataatttttataacaactttctctctcatactcatattatattttta 52263874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 10902705 - 10902781
Alignment:
Q  223 gagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttac 300  Q
    |||||||||||||| ||| | ||| |||||||||||||||||||| |||| ||||||| | ||| ||| |||||||||    
T  10902705 gagaaatgatatttgaataaccat-ttttgataatttttgtaacaactttctctctcacactcacattatgtttttac 10902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 15717048 - 15716990
Alignment:
Q  222 agagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctca 280  Q
    ||||||||||||||| ||| ||||  ||||||||| |||||| ||| ||||||||||||    
T  15717048 agagaaatgatatttgaataatcactttttgataacttttgtgacaactttttctctca 15716990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 37133909 - 37133857
Alignment:
Q  248 ttttgataatttttgtaacagctttttctctcaaattcatattgtgtttttac 300  Q
    ||||||||| |||||| ||| |||||||||||| | ||||||| |||||||||    
T  37133909 ttttgataacttttgtgacaactttttctctcacactcatattatgtttttac 37133857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 19982060 - 19982000
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctca 280  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||| |||  |||||||||||    
T  19982060 aaagagaaatgatattttaacaatcattttttgataatttttgtgacaattttttctctca 19982000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 31683521 - 31683454
Alignment:
Q  269 ctttttctctcaaattcatattgtgtttttaccttttcttctgattgttttgg-ttttgtgtcaatac 335  Q
    |||| ||||||| ||||||||| ||||||||| || |||| | |||||||||| ||||||||||||||    
T  31683521 ctttctctctcatattcatattatgtttttactttctctttttattgttttggtttttgtgtcaatac 31683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 1416113 - 1416053
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctca 280  Q
    |||||||||||||||||||||  |||| || ||||||||||||| |||  |||||||||||    
T  1416113 aaagagaaatgatatttaaatattcattttatgataatttttgtgacaattttttctctca 1416053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 17551453 - 17551339
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttaccttttct-tctgattgttt 318  Q
    ||||||||||||||||| ||  | ||| |||||| || |||||||||| |||| ||||||| | ||| ||| ||||||||| || ||| ||| |||||||    
T  17551453 aaagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacattatgtttttactttatctctct-attgttt 17551355  T
Q  319 tgg-ttttgtgtcaat 333  Q
    ||| ||||||||||||    
T  17551354 tggtttttgtgtcaat 17551339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 2242096 - 2242036
Alignment:
Q  220 aaagagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctca 280  Q
    ||||||||||||||||| ||  ||||| |||||| ||||||||| ||| |||| |||||||    
T  2242096 aaagagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctca 2242036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 9311040 - 9311153
Alignment:
Q  223 gagaaatgatatttaaattatcatattttgataatttttgtaacagctttttctctcaaattcatattgtgtttttaccttttcttctgattgttttggt 322  Q
    ||||||||||||||  |  ||||| || ||||||| ||||| ||| |||| ||||| | | ||||||| ||||||||| || ||| |  |||||||||||    
T  9311040 gagaaatgatatttgtacaatcattttctgataatatttgtgacaactttctctcttacactcatattatgtttttactttctctccctattgttttggt 9311139  T
Q  323 ttt-gtgtcaatac 335  Q
    ||| ||||||||||    
T  9311140 tttcgtgtcaatac 9311153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 42672881 - 42672829
Alignment:
Q  248 ttttgataatttttgtaacagctttttctctcaaattcatattgtgtttttac 300  Q
    |||||||||||||||| |||  ||||||||||| ||||| ||| |||||||||    
T  42672881 ttttgataatttttgtgacaaatttttctctcatattcacattatgtttttac 42672829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University