View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_23 (Length: 327)
Name: NF20235_low_23
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_23 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 116 - 307
Target Start/End: Complemental strand, 82750 - 82557
Alignment:
| Q |
116 |
atgtggccgttgattcaggcaggtaacgtgggccttgtacaacaaactgttagaagaaacaactgtattcctaaagataaccatcacattttagtgacta |
215 |
Q |
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| T |
82750 |
atgtggccattgattcaggcaggtaacgtgggcatc--acaacaaactgttagaagaaacaactgtattcctaaacataaccatcacattttattgacta |
82653 |
T |
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| Q |
216 |
catgggtagatatcttacaaagagatgagaaaaagggttatgaagta----tgtgtgatgtaattctccttctatctcggtaattctctagtccct |
307 |
Q |
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| T |
82652 |
catgggtagatatcttacaaagagatgagaaaaatggttatgaagtatgcgtgagtgatgtaattctccttctatctcactaattctctagtccct |
82557 |
T |
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