View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_24 (Length: 326)
Name: NF20235_low_24
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 29675094 - 29675376
Alignment:
| Q |
19 |
atacaagtctagagaaagtttctattcatttatttgcattgctagctttttcctgcttatttatcggtgtcagttattctctcgtgttcaatttcattta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29675094 |
atacaagtctagagaaagtttctattcatttatttgcattgctagctttttcctgcttatttatcggtgtcagttattctctcgtgttcaatttcattta |
29675193 |
T |
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| Q |
119 |
tcttcacttttattgtttgatacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgttttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29675194 |
tcttcacttttattgtttgatacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgttttta |
29675293 |
T |
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| Q |
219 |
ctttcatcctctttacgtacaacttttcttactttattctatatatgcgtttattgtgttcaatggcaatatttaatccccta |
301 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29675294 |
ctttcatcctctttatgtacaacttttcttactttattctatacatgcgtttattgtgttcaatggcaatatttaatccccta |
29675376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 26456212 - 26456493
Alignment:
| Q |
19 |
atacaagtctagagaaagtttctattcatttatttgcattgctagctttttcctgcttatttatcggtgtcagttattctctcgtgttcaatttcattta |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
26456212 |
atacaagcctagagaaagtttctattcatttatttgctttgttagttttttcctgcttatttatcagtgtcagttattctctcgtgttctatttcattta |
26456311 |
T |
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| Q |
119 |
tcttcacttttattgtttgatacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgttttta |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
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| T |
26456312 |
tcttcacttttattttttgatacagcggcaaattctaagttgaccttgtcgaaaaatattcgggaactaatgactttaatgcattcaaaggttgttttca |
26456411 |
T |
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| Q |
219 |
ctttcatcctctttacgtacaacttttcttactttattctatatatgcgtttattgtgttcaatggcaatatttaatcccct |
300 |
Q |
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||||||| ||||||| || || ||||||||||||||||| |||| |||||||||| ||| | |||||| || ||||||| |
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| T |
26456412 |
ctttcattctctttatctataatttttcttactttattctttatacatgtttattgtgatcagtagcaatactttatcccct |
26456493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 11494401 - 11494238
Alignment:
| Q |
65 |
tttttcctgcttatttatcggtgtcagttattctctcgtgttcaatttcatttatcttcacttttattgtttgatacagcggcaaattctaagtcgacct |
164 |
Q |
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|||| |||||||||||||| || ||||||||||||| |||||||| || ||| |||||||||||||| ||| | ||||| || |||||| | ||||||| |
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| T |
11494401 |
ttttccctgcttatttatcattgccagttattctctcatgttcaatctcctttttcttcacttttattttttaacacagctgcgaattctgaatcgacct |
11494302 |
T |
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| Q |
165 |
tgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgtttttactttcatcct |
228 |
Q |
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| T |
11494301 |
tgtccaaatctattcgggaactaatgactctaatgcattcaaaggttgtttttattttcttcct |
11494238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 21526581 - 21526500
Alignment:
| Q |
138 |
atacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgtttttac |
219 |
Q |
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||||||||||| ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
21526581 |
atacagcggcagattctgaatcgatcttgtcgaaaaatatttgggaactaatgactctaatgaattcaaaggttctttttac |
21526500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 21528130 - 21528037
Alignment:
| Q |
138 |
atacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatgactctaatgaattcaaaggttgtttttactttcatcctctt |
231 |
Q |
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|||||||| || ||||| | |||| |||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
21528130 |
atacagcgccagattctgaatcgatcttgtcgaaaaatatttgagaactaatgactctactgaattcaaaggttctttttactttcttcctctt |
21528037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 21530980 - 21530885
Alignment:
| Q |
138 |
atacagcggcaaattctaagtcgaccttgtcg-aaaaatattcgggaactaatgactctaatgaa-ttcaaaggttgtttttactttcatcctctt |
231 |
Q |
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||||||||||||||||| | |||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||||| ||||||| ||| ||||||| |
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| T |
21530980 |
atacagcggcaaattctgaatcgatcttgtcggaaaaatatttgggaactaaagactctaatgaatttcaaaggttctttttaccttcttcctctt |
21530885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 21532238 - 21532185
Alignment:
| Q |
138 |
atacagcggcaaattctaagtcgaccttgtcgaaaaatattcgggaactaatga |
191 |
Q |
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||||||||| ||||||| | |||| ||||| |||||||||| |||||||||||| |
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| T |
21532238 |
atacagcggtaaattctgaatcgatcttgttgaaaaatatttgggaactaatga |
21532185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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