View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_25 (Length: 309)
Name: NF20235_low_25
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 26838807 - 26838554
Alignment:
| Q |
43 |
acataaacgcaattgtttcttttgtcattggcctattgcaaatcaattttagaagtaattccttaatattccttcacttcaatcagatccaaaattgata |
142 |
Q |
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| T |
26838807 |
acataaacgcaattgtttcttttgtcattggcctattgcaaatcaattttagtagtaattccttaatattccttcacttcaatcagatccaaaattgata |
26838708 |
T |
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| Q |
143 |
tatgtgtgaagtcaacaaacctcagatccattccccctcaacagttttatgaaatcataacaattggtcaaatgactcaagttgctcatcatatatatgt |
242 |
Q |
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| T |
26838707 |
tatgtgtgaagtcaacaaacctcagatccatttcccctcaacagttttatgaaatcataacaattggtcaaatgactcaagttgttcatcatatatatgt |
26838608 |
T |
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| Q |
243 |
tccaggagggcaattgttgcttaaagacaagagatgaatcattaatttctgatg |
296 |
Q |
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| T |
26838607 |
tccaggagggcaattgttgcttaaagacaagagaagaatgattaatttcagatg |
26838554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26838879 - 26838834
Alignment:
| Q |
1 |
cacacagttgacgtagcaaccaaaacaaagcaaaagagtacaacat |
46 |
Q |
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| T |
26838879 |
cacacagttgacgtagcaaccaaaacaaagcaaaagagtacaacat |
26838834 |
T |
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