View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_low_27 (Length: 307)

Name: NF20235_low_27
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_low_27
NF20235_low_27
[»] scaffold0049 (1 HSPs)
scaffold0049 (9-289)||(58152-58423)
[»] chr1 (9 HSPs)
chr1 (224-289)||(49557087-49557152)
chr1 (226-287)||(15360842-15360903)
chr1 (224-289)||(49517016-49517081)
chr1 (234-289)||(30371104-30371159)
chr1 (224-262)||(14737791-14737829)
chr1 (224-262)||(36641821-36641859)
chr1 (224-281)||(4200175-4200232)
chr1 (224-289)||(38578473-38578538)
chr1 (225-261)||(44936677-44936713)
[»] chr7 (4 HSPs)
chr7 (229-289)||(1417215-1417275)
chr7 (224-282)||(28165037-28165095)
chr7 (224-262)||(39591553-39591591)
chr7 (224-261)||(5276170-5276207)
[»] chr6 (6 HSPs)
chr6 (224-263)||(28531626-28531665)
chr6 (224-289)||(4006660-4006725)
chr6 (221-261)||(5328917-5328957)
chr6 (224-262)||(24836285-24836323)
chr6 (229-262)||(5551413-5551446)
chr6 (221-261)||(2027493-2027533)
[»] scaffold0024 (1 HSPs)
scaffold0024 (224-289)||(27522-27587)
[»] chr8 (5 HSPs)
chr8 (224-261)||(38561672-38561709)
chr8 (231-289)||(34551073-34551131)
chr8 (224-261)||(26820145-26820182)
chr8 (224-261)||(40728505-40728542)
chr8 (225-261)||(29699201-29699237)
[»] chr5 (7 HSPs)
chr5 (187-262)||(21782655-21782727)
chr5 (229-290)||(42181150-42181211)
chr5 (228-261)||(39823208-39823241)
chr5 (229-289)||(14295457-14295517)
chr5 (225-289)||(37526258-37526322)
chr5 (225-289)||(37588419-37588483)
chr5 (225-289)||(37690696-37690760)
[»] chr4 (9 HSPs)
chr4 (224-289)||(49219085-49219150)
chr4 (229-288)||(4071833-4071892)
chr4 (224-282)||(30024646-30024704)
chr4 (236-289)||(18630638-18630691)
chr4 (229-262)||(41701527-41701560)
chr4 (229-290)||(44638231-44638292)
chr4 (226-262)||(8130122-8130158)
chr4 (229-289)||(10192235-10192295)
chr4 (221-261)||(23815313-23815353)
[»] chr3 (10 HSPs)
chr3 (224-289)||(20192665-20192730)
chr3 (224-289)||(24235742-24235807)
chr3 (224-289)||(48364938-48365003)
chr3 (224-289)||(48397592-48397657)
chr3 (221-261)||(54775071-54775111)
chr3 (224-289)||(10101535-10101600)
chr3 (224-289)||(10212460-10212525)
chr3 (228-289)||(22214740-22214801)
chr3 (237-285)||(26599137-26599185)
chr3 (224-272)||(39971265-39971313)
[»] chr2 (5 HSPs)
chr2 (221-261)||(43199186-43199226)
chr2 (238-289)||(11513858-11513909)
chr2 (224-261)||(3458603-3458640)
chr2 (224-285)||(10143118-10143179)
chr2 (229-289)||(10285304-10285364)


Alignment Details
Target: scaffold0049 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 58423 - 58152
Alignment:
Q  9 tgtcgaagaatatttgcttgttatatctttgtctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58423 tgtcaaagaatatttgcttgttatatctttgtctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagc 58324  T
Q  109 taaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58323 taaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaatta 58224  T
Q  209 tgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58223 tgtg---------tttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 58152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 49557087 - 49557152
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || ||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttt 49557152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  226 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 287  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 49517016 - 49517081
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttt 49517081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 30371104 - 30371159
Alignment:
Q  234 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttt 30371159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaat 262  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaat 262  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 4200175 - 4200232
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctata 281  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctata 4200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 38578473 - 38578538
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| ||||||||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  225 aagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 1417215 - 1417275
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttt 1417275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 282  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaat 262  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaata 263  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 4006660 - 4006725
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttt 4006725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  221 gtttaagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaat 262  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaat 262  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 2027533 - 2027493
Alignment:
Q  221 gtttaagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaa 2027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 27522 - 27587
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  |||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttt 27587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 38561672 - 38561709
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaa 38561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 34551073 - 34551131
Alignment:
Q  231 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||||||||||||||| ||||||||| || || || || | ||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttt 34551131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  225 aagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  187 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 262  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 42181211 - 42181150
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttg 290  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| |||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgtttg 42181150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 39823241 - 39823208
Alignment:
Q  228 ttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||||||||||||||||||| |||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaa 39823208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 14295457 - 14295517
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||| |||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttt 14295517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 37526322 - 37526258
Alignment:
Q  225 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttt 37526258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 37588483 - 37588419
Alignment:
Q  225 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttt 37588419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 37690760 - 37690696
Alignment:
Q  225 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttt 37690696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 49219085 - 49219150
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| ||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttt 49219150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 288  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 282  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 18630638 - 18630691
Alignment:
Q  236 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||||||| |||||||||| | || || ||||| ||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttt 18630691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaat 262  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 44638292 - 44638231
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttg 290  Q
    ||||||||||||||||||| | ||||||| ||||   ||| ||||| |||||||||||||||    
T  44638292 tatttatataacaaaagattatataaagttaaattacattcatataagctataagttgtttg 44638231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 8130122 - 8130158
Alignment:
Q  226 agttatttatataacaaaagataacataaagtcaaat 262  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaat 8130158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 10192235 - 10192295
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||| ||||||||||||||  |||||||||||| || || ||||| | ||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttt 10192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  221 gtttaagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 20192730 - 20192665
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| |||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgttt 20192665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 24235807 - 24235742
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttt 24235742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 48365003 - 48364938
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttt 48364938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 48397592 - 48397657
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttt 48397657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  221 gtttaagttatttatataacaaaagataacataaagtcaaa 261  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 10101600 - 10101535
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttt 10101535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 10212525 - 10212460
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttt 10212460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 22214801 - 22214740
Alignment:
Q  228 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  |||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttt 22214740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  237 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 285  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaata 272  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  221 gtttaagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 11513858 - 11513909
Alignment:
Q  238 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttt 11513909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaa 261  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 10143118 - 10143179
Alignment:
Q  224 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagtt 285  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| ||||||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtt 10143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 10285304 - 10285364
Alignment:
Q  229 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 289  Q
    ||||| ||||||||||| ||| |||| |||||||||  || ||||| ||||||||||||||    
T  10285304 tatttctataacaaaagttaaaataatgtcaaataggttttatataagctataagttgttt 10285364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University