View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_32 (Length: 291)
Name: NF20235_low_32
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_32 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 23770139 - 23770401
Alignment:
| Q |
12 |
ttatacttccaagcaacaatgtataccattattaaaattttaaaatattaaccaacaatgaaatagaattatttttgtttatgtaaaaataaaatcaata |
111 |
Q |
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| T |
23770139 |
ttatacttccaagcaacaatgtataccattattaaaattttaaaatattaaccaacaatgaaatagaattatttttgtttatgtaaaaataaaatcaata |
23770238 |
T |
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| Q |
112 |
tctggtttctatctctatcaagggagcaggagcaatgtcattttcataagtacacaatataaaaagaactcaacagcacaatgtcaaaaaacttttagaa |
211 |
Q |
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| T |
23770239 |
tctggtttctatctctatcaagggagcaggagcaatgtcattttcataagtacacaatataaaaagaactcaacagcacaatgccaaaaaacttttagaa |
23770338 |
T |
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| Q |
212 |
tcaaaacttccactgaacctacacaattttcctaactcttctttttcttcataacctcttttt |
274 |
Q |
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| T |
23770339 |
tcaaaacttccactgaacctacacaattttcataactcttctttttcttcataacctcttttt |
23770401 |
T |
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Back To:
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Target: scaffold0340 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 7837 - 7789
Alignment:
| Q |
227 |
aacctacacaattttcctaactcttcttt-ttcttcataacctcttttt |
274 |
Q |
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| T |
7837 |
aacctacacaattttcttaacccttctttcttcttcataacatcttttt |
7789 |
T |
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