View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_36 (Length: 276)
Name: NF20235_low_36
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 11962717 - 11962960
Alignment:
| Q |
20 |
agtaatcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctaca |
119 |
Q |
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| T |
11962717 |
agtaatcccttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttgtataca |
11962816 |
T |
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| Q |
120 |
ctctcttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcacttgcaaacaatcatgaagttttttccaaacttaagagagt |
219 |
Q |
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| T |
11962817 |
ctgtcttctttaacaagtctttccctgagaggaatgtatcttagttttgactcttctcacttgcaaacaatcatgaagttttttccaaacttaagagagt |
11962916 |
T |
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| Q |
220 |
tgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
263 |
Q |
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| T |
11962917 |
tgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
11962960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 11852832 - 11852585
Alignment:
| Q |
22 |
taatcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacact |
121 |
Q |
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| T |
11852832 |
taatcccttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtattttgatcttacaaatgataatataaaatggttgtctacact |
11852733 |
T |
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| Q |
122 |
ctcttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaaga |
215 |
Q |
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| T |
11852732 |
ctcttctttaacaagtctttccctcagcggacaatatcgtaggtttgtcttttttcactacttgcagcaaacaatcatgaagtttattccaaacttaaga |
11852633 |
T |
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| Q |
216 |
gagttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
263 |
Q |
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| T |
11852632 |
gagttgaggttagttgattttggtcttatagatactgatgtcgtgtct |
11852585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 11833570 - 11833321
Alignment:
| Q |
20 |
agtaatcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctaca |
119 |
Q |
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||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||| || | ||| || ||||||||| ||||| |||||| |
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| T |
11833570 |
agtaatcccttttcaaccaggaaatcttcctgttttgcacactcttaaacttgatgtgtattatcatttcacagatagtaatataaagtggttgtctaca |
11833471 |
T |
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| Q |
120 |
ctctcttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaa |
213 |
Q |
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| T |
11833470 |
ctctcttctttaacaagtctttccctgagcggacaatatcgtaggtttgtcttttttcactacttgctccaaacaatcatgaagtttattccaaacttaa |
11833371 |
T |
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| Q |
214 |
gagagttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
263 |
Q |
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| T |
11833370 |
gagagttgaggttagttgattttggtcttatagatactgatgtcgtgtct |
11833321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 11928610 - 11928670
Alignment:
| Q |
203 |
tccaaacttaagagagttgaggttagttgaatttggtctgatagataatgatgtcgcgtct |
263 |
Q |
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| T |
11928610 |
tccaaacttatgagagttgagattggttcaatttggtcttctagataatgatgtcgcgtct |
11928670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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