View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_low_44 (Length: 253)

Name: NF20235_low_44
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_low_44
NF20235_low_44
[»] chr5 (6 HSPs)
chr5 (3-242)||(28695449-28695686)
chr5 (1-105)||(28673334-28673438)
chr5 (150-242)||(28710026-28710118)
chr5 (27-144)||(29021714-29021831)
chr5 (16-110)||(28662013-28662107)
chr5 (213-242)||(28673303-28673332)
[»] chr1 (2 HSPs)
chr1 (152-242)||(12483955-12484045)
chr1 (180-242)||(23341332-23341394)
[»] chr8 (2 HSPs)
chr8 (18-144)||(18314660-18314786)
chr8 (32-139)||(17642962-17643069)
[»] chr7 (2 HSPs)
chr7 (150-239)||(11781163-11781252)
chr7 (150-233)||(21508871-21508954)
[»] chr3 (1 HSPs)
chr3 (152-239)||(13930264-13930351)
[»] chr4 (5 HSPs)
chr4 (25-86)||(2367988-2368049)
chr4 (42-86)||(2373554-2373598)
chr4 (41-86)||(5106639-5106684)
chr4 (54-86)||(2518924-2518956)
chr4 (54-86)||(12124536-12124568)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 28695686 - 28695449
Alignment:
Q  3 ctactgtggtagatgaactctctgggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28695686 ctactgtggtagatgaactctctgggatcactaatatcgagttcttcgggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttg 28695587  T
Q  103 caaggtgggaacaagcgagagaggtcatagttgtaatgttttagacttgcttaaatcattaaaacattacacatatcactatttacacatcattttcaac 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  28695586 caaggtgggaacaagtgagagaggtcatagttgtaatgttttagactcgcttaaatcattaaaacattacacatat--ctatttacacatcattttcaac 28695489  T
Q  203 ccagttttacaaatgcactactgtttgcaccctacttcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28695488 ccagttttacaaatgcactactgtttgcaccctacttcat 28695449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28673438 - 28673334
Alignment:
Q  1 aactactgtggtagatgaactctctgggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagt 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28673438 aactactgtggtagatgaactctccgggatcactaagatcgagttcttcgagcaaagggaagcaatcagcaatgaagaagagatcggtgctatggagagt 28673339  T
Q  101 tgcaa 105  Q
    |||||    
T  28673338 tgcaa 28673334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 28710118 - 28710026
Alignment:
Q  150 tgcttaaatcattaaaacattacacatatcactatttacacatcattttcaacccagttttacaaatgcactactgtttgcaccctacttcat 242  Q
    |||||||||||||| ||| || ||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  28710118 tgcttaaatcattacaaccttccacatatcactgtttaaacatctttttctacccagttttactaatgcactactgtttgcaccctacttcat 28710026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 29021714 - 29021831
Alignment:
Q  27 ggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaagcgagagagg 126  Q
    |||| ||||| ||||||||||||  |||||||||||||||||||||| |  ||||||| |||||||| ||| ||| |||||||| |||||| ||||||||    
T  29021714 ggataactaagatcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagagg 29021813  T
Q  127 tcatagttgtaatgtttt 144  Q
    ||| ||| ||||||||||    
T  29021814 tcaaagtagtaatgtttt 29021831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 28662107 - 28662013
Alignment:
Q  16 tgaactctctgggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgg 110  Q
    ||||||||  ||||||||||| ||||||||||||  |||||||||||||||  | |||||  || |||||||  |||||||||||||||||||||    
T  28662107 tgaactcttcgggatcactaagatcgagttcttcgagcaaagggaagcaatagggaatgagaaaaagatcagatctatggagagttgcaaggtgg 28662013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 28673332 - 28673303
Alignment:
Q  213 aaatgcactactgtttgcaccctacttcat 242  Q
    ||||||||||||||||||||||||||||||    
T  28673332 aaatgcactactgtttgcaccctacttcat 28673303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 12484045 - 12483955
Alignment:
Q  152 cttaaatcattaaaacattacacatatcactatttacacatcattttcaacccagttttacaaatgcactactgtttgcaccctacttcat 242  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||||| ||| |||||||| ||||||||||||||| |||||||| ||||    
T  12484045 cttaaatcattaaaacactacacatatcactatttacacctctttttctacctagttttactaatgcactactgtttacaccctacctcat 12483955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 23341394 - 23341332
Alignment:
Q  180 actatttacacatcattttcaacccagttttacaaatgcactactgtttgcaccctacttcat 242  Q
    |||| |||||| || ||||| |||||||||||| |||| | || |||||||||||||||||||    
T  23341394 actagttacacctccttttctacccagttttactaatgtattattgtttgcaccctacttcat 23341332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 18314786 - 18314660
Alignment:
Q  18 aactctctgggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaag 117  Q
    |||||| |||| | |||||  |||||||||||  |||||||||| ||||||||||||| |||||||||||||| |||||||| |  || ||  ||||| |    
T  18314786 aactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatg 18314687  T
Q  118 cgagagaggtcatagttgtaatgtttt 144  Q
     ||| ||||||| ||||||||| ||||    
T  18314686 agagtgaggtcaaagttgtaatatttt 18314660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 17643069 - 17642962
Alignment:
Q  32 actaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaagcgagagaggtcata 131  Q
    ||||| ||||||||||||  |||||||||| |||||||| |||| |   || |||| |||| ||||| || | | ||||||||||| ||||||||||| |    
T  17643069 actaagatcgagttcttctagcaaagggaaacaatcagcgatgagggtaaggtcagagctacggagatttcccatgtgggaacaagtgagagaggtcaaa 17642970  T
Q  132 gttgtaat 139  Q
    ||||||||    
T  17642969 gttgtaat 17642962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11781163 - 11781252
Alignment:
Q  150 tgcttaaatcattaaaacattacacatatcactatttacacatcattttcaacccagttttacaaatgcactactgtttgcaccctactt 239  Q
    ||||| ||||||||||||| |||| | || |||| ||| || |||||||| |||||||||||| ||||||||| |||||||| |||||||    
T  11781163 tgcttgaatcattaaaacactacatagattactagttatacctcattttctacccagttttactaatgcactagtgtttgcaacctactt 11781252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 21508871 - 21508954
Alignment:
Q  150 tgcttaaatcattaaaacattacacatatcactatttacacatcattttcaacccagttttacaaatgcactactgtttgcacc 233  Q
    |||||||||| |||||||||||  || || ||||||| ||| |  ||||| |||||||||||| ||||||||| ||||||||||    
T  21508871 tgcttaaatctttaaaacattattcaaattactatttgcaccttcttttctacccagttttactaatgcactattgtttgcacc 21508954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 13930264 - 13930351
Alignment:
Q  152 cttaaatcattaaaacattacacatatcactatttacacatcattttcaacccagttttacaaatgcactactgtttgcaccctactt 239  Q
    ||||||||||||||||| |||||| || | ||||||||| |  ||||| ||| | |||||| ||||||||||| |||||||| |||||    
T  13930264 cttaaatcattaaaacactacacaaattattatttacacctgcttttctaccaaattttactaatgcactactatttgcaccttactt 13930351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 2368049 - 2367988
Alignment:
Q  25 tgggatcactaatatcgagttcttccggcaaagggaagcaatcagcaatgaagaagagatca 86  Q
    |||||| ||| || |||||||||||  | |||||||| ||||||||||||||||||||||||    
T  2368049 tgggataactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 2367988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 2373598 - 2373554
Alignment:
Q  42 agttcttccggcaaagggaagcaatcagcaatgaagaagagatca 86  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatca 2373554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 5106684 - 5106639
Alignment:
Q  41 gagttcttccggcaaagggaagcaatcagcaatgaagaagagatca 86  Q
    |||||||||  | |||||||| ||||||||||||||||||||||||    
T  5106684 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 5106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 2518924 - 2518956
Alignment:
Q  54 aaagggaagcaatcagcaatgaagaagagatca 86  Q
    |||||||| ||||||||||||||||||||||||    
T  2518924 aaagggaaacaatcagcaatgaagaagagatca 2518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 12124536 - 12124568
Alignment:
Q  54 aaagggaagcaatcagcaatgaagaagagatca 86  Q
    |||||||| ||||||||||||||||||||||||    
T  12124536 aaagggaaacaatcagcaatgaagaagagatca 12124568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University