View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_46 (Length: 219)
Name: NF20235_low_46
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 14341814 - 14341638
Alignment:
| Q |
28 |
acaatgaacgttgcagtatatattatgctgaaatatgtaaaaatggtgctatttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaaca |
127 |
Q |
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| T |
14341814 |
acaatgaaagttgcagtatatattatgctgaaatatgtaaaaatcgtgctatttgtttggaagctccttggctttgtatttgttgtgattttcaaaaaca |
14341715 |
T |
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| Q |
128 |
tgaaattccatgattacaagccatatttttattatattgtgggtaagtaatgctaacattattatagatttatattc |
204 |
Q |
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| T |
14341714 |
tgaaattccatgattacaagccatatttttattatattgtgggtaagtaatgctaacattattatagatttatattc |
14341638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 3603014 - 3602832
Alignment:
| Q |
28 |
acaatgaacgttgcagtatatattatgctgaaatatgtaaaaatggtgctatttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaaca |
127 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603014 |
acaatgaaagttgcagtatatattatgctgaaatatgtaaaaatggtgttgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaaca |
3602915 |
T |
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| Q |
128 |
tgaaattccatgattacaagccatatttttattatattgtgggtaag----taatgctaacattattatagatttatattctt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
3602914 |
tgaaattccatgattacaagccatatttttattatattgtgggtaggttcctaatgctaacattaatatagttttatattctt |
3602832 |
T |
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