View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_47 (Length: 217)
Name: NF20235_low_47
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 54381427 - 54381242
Alignment:
| Q |
17 |
gaggaatggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattg |
116 |
Q |
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| T |
54381427 |
gaggaatggtggagaaatgagcaattctgggtcattggtggtgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattg |
54381328 |
T |
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| Q |
117 |
acacaaacttcactgttacatccaaggcaacagatgatgaggaatttggagaattgtacgccatcaagtggaccactctcctaatt |
202 |
Q |
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| T |
54381327 |
acacaaacttcactgttacatccaaggcaacagatgatgaggaatttggagaattgtacgccatcaagtggaccactctcctaatt |
54381242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 9482339 - 9482454
Alignment:
| Q |
20 |
gaatggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattgaca |
119 |
Q |
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| T |
9482339 |
gaatggtggagaaatgaacaattttgggttattggtggtgtttcagctcatctttttgctgtgttccaaggtttactcaaagtacttgctggaattgaca |
9482438 |
T |
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| Q |
120 |
caaacttcactgttac |
135 |
Q |
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| T |
9482439 |
caaacttcactgttac |
9482454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 49589448 - 49589325
Alignment:
| Q |
23 |
tggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattgacacaa |
122 |
Q |
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| T |
49589448 |
tggtggagaaacgagcagttttgggttatcggtggaacatctgcacatcttttcgccgtgttccaagggcttctcaaagtgcttgcagggattgacacaa |
49589349 |
T |
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| Q |
123 |
acttcactgttacatccaaggcaa |
146 |
Q |
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| || || |||||||| ||||||| |
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| T |
49589348 |
attttaccgttacatcaaaggcaa |
49589325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 15173942 - 15174051
Alignment:
| Q |
23 |
tggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattgacacaa |
122 |
Q |
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| T |
15173942 |
tggtggagaaacgagcaattctgggttattggaggtgtatcagcacatctttttgcagtgtttcaaggtctcctcaaagttcttgcaggagtagacacaa |
15174041 |
T |
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| Q |
123 |
acttcactgt |
132 |
Q |
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| T |
15174042 |
actttactgt |
15174051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 16735249 - 16735379
Alignment:
| Q |
23 |
tggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattgacacaa |
122 |
Q |
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| T |
16735249 |
tggtggagaaatgaacaattttgggtcattgggggtgtgtcagcgcatctttttgccgtgtttcaaggtctactaaaagtacttgcgagaatcgacacaa |
16735348 |
T |
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| Q |
123 |
acttcactgttacatccaaggcaacagatga |
153 |
Q |
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| T |
16735349 |
acttcactgtcacttccaaagcatcagatga |
16735379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 13822915 - 13822785
Alignment:
| Q |
23 |
tggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgctgtcatacaagggcttctgaaagttcttgctggaattgacacaa |
122 |
Q |
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| T |
13822915 |
tggtggagaaacgaacagttttgggttatcggtggtgtgtcagcacatcttttcgccgtgttccaaggtctactaaaagtacttgctggaatcgacacaa |
13822816 |
T |
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| Q |
123 |
acttcactgttacatccaaggcaacagatga |
153 |
Q |
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| T |
13822815 |
acttcaccgtcacctccaaagcatcagatga |
13822785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 26496167 - 26496106
Alignment:
| Q |
17 |
gaggaatggtggagaaatgagcaattctgggtcattggtggcgtatcagcacatctctttgc |
78 |
Q |
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| T |
26496167 |
gaggaatggtggagaaatcaacaattttgggtcattggaagtatatcagcacatctctttgc |
26496106 |
T |
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