View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_5 (Length: 487)
Name: NF20235_low_5
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 51403147 - 51403605
Alignment:
| Q |
19 |
agaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttga |
118 |
Q |
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| T |
51403147 |
agaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttga |
51403246 |
T |
|
| Q |
119 |
actcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccatt |
218 |
Q |
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| T |
51403247 |
actcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctttgtggaatcacattcccatttgttcttggcataggaacatccgtt |
51403346 |
T |
|
| Q |
219 |
gttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcgaa |
318 |
Q |
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| T |
51403347 |
gttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcgaa |
51403446 |
T |
|
| Q |
319 |
tcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctctagc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51403447 |
tcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttcttgctctagc |
51403546 |
T |
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| Q |
419 |
catatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
477 |
Q |
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| T |
51403547 |
catatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
51403605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 39 - 415
Target Start/End: Complemental strand, 29983660 - 29983284
Alignment:
| Q |
39 |
ttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatcc |
138 |
Q |
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||||| || |||||||||||||| || || ||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
29983660 |
ttccctaaaagaagcttaacagttcttgatacactagccaacattggcctgctattcttcttatttctagtaggtcttgaactcgacatgcgttcgatac |
29983561 |
T |
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| Q |
139 |
gtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccattgttcttagagccacaatctc |
238 |
Q |
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| | ||||||| |||||||||| || ||||| |||||||||| |||||||||| |||||||| || || || |||||||| | |||||||| |
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| T |
29983560 |
gcaaaacaggttcaaaagccttatgcatagcccttgctggaatcacagtcccatttgtacttggcattggcacctcacttgttcttcgtgccacaataaa |
29983461 |
T |
|
| Q |
239 |
caaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcgaatcctagctgagctcaaactg |
338 |
Q |
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| T |
29983460 |
caaagatgctaatccaacttccttccttgttttcatgggcgttgctctctcgatcacagcctttcctgtccttgctcgaatcctagctgaactcaaactc |
29983361 |
T |
|
| Q |
339 |
ctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctct |
415 |
Q |
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|| || || ||||||||||| || ||||||||||| |||||||| ||||| || || || ||| ||||||| ||||| |
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| T |
29983360 |
ctcacaaccgatgttggtcggatggcaatgtcagctgctgctgtcaatgacgtcgctgcttggatacttcttgctct |
29983284 |
T |
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