View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20235_low_7 (Length: 433)
Name: NF20235_low_7
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20235_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 2935648 - 2935224
Alignment:
| Q |
1 |
actaaaacgttattgagcaatgtaacactatccaagcgtaacaccagtgtaatttgagcagtaagtgtgaatagctcaaacaccacaataagtgcggata |
100 |
Q |
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| T |
2935648 |
actaaaacgttattgagcaatgtaacactatccaagcgtaacacctgtgtaatttgagcagtaagtgtgaatagctcaaacaccacaataagtgcggata |
2935549 |
T |
|
| Q |
101 |
gcaaaccgatccctcgcgccttctcgagagtgataatacttgaggaactcagcttgatcaaaaggcttaaagagcaaagggtgctcctcgtccaccagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2935548 |
gcaaaccgatccctcgcgccttctcgagagtgataatacttgaggaactcagcttgatcaaaaggcttaaagagcaaagggtgctcctcgtccaccagct |
2935449 |
T |
|
| Q |
201 |
cctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcatcaccctgtgaaatggcga |
300 |
Q |
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| T |
2935448 |
cctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcatcaccctgtgaaatggcga |
2935349 |
T |
|
| Q |
301 |
atgcagcctcccgtttgaccatgcctacaaaaatttacatgagaaatgaaaattttcaatataattcaacaaatgccagaataat---attgtttttaaa |
397 |
Q |
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| T |
2935348 |
atgcaacctcccgtttgaccatgcctac-aaaatttacatgagaaatgaaaattttcaatataattcaacaagtgccagaataataaaattgtttttaaa |
2935250 |
T |
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| Q |
398 |
atgcacgtgaccacggtctgtgctgc |
423 |
Q |
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| T |
2935249 |
atgcacgtgaccacggtctgggctgc |
2935224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 72 - 332
Target Start/End: Complemental strand, 2920729 - 2920469
Alignment:
| Q |
72 |
tagctcaaacaccacaataagtgcggatagcaaaccgatccctcgcgccttctcgagagtgataatacttgaggaactcagcttgatcaaaaggcttaaa |
171 |
Q |
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|||||||||| |||||||||||||| |||||||| | ||||| ||||| | || || ||||||||||||||| ||| | |||||| ||||| |||| |
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| T |
2920729 |
tagctcaaacgccacaataagtgcgcatagcaaattggtccctttggcctttttcagtgtaataatacttgaggaattcaacatgatcataaggcctaaa |
2920630 |
T |
|
| Q |
172 |
gagcaaagggtgctcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattc |
271 |
Q |
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|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| | |||||||| |||||| ||| |
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| T |
2920629 |
gagcaaagggtgttcctcatccacaagctcctccggagcttttataatgtaccctcctttcgggatagagaacagcccggttgaatatcgtgcctcgttc |
2920530 |
T |
|
| Q |
272 |
ccactcatcatcaccctgtgaaatggcgaatgcagcctcccgtttgaccatgcctacaaaa |
332 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
2920529 |
ccactcatcatcacccgatgaaacggcgaatgcagcctcccgtttgaccatgcctgcaaaa |
2920469 |
T |
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