View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20235_low_8 (Length: 429)

Name: NF20235_low_8
Description: NF20235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20235_low_8
NF20235_low_8
[»] chr5 (1 HSPs)
chr5 (11-413)||(36871684-36872079)
[»] chr3 (3 HSPs)
chr3 (225-412)||(37629469-37629656)
chr3 (291-382)||(40296503-40296594)
chr3 (50-102)||(47187644-47187696)
[»] chr2 (1 HSPs)
chr2 (225-364)||(8926973-8927112)
[»] chr4 (1 HSPs)
chr4 (225-298)||(55528128-55528201)
[»] chr7 (4 HSPs)
chr7 (57-102)||(19267394-19267439)
chr7 (57-102)||(7754238-7754283)
chr7 (70-102)||(30969761-30969793)
chr7 (46-102)||(38602992-38603048)
[»] scaffold1625 (1 HSPs)
scaffold1625 (50-102)||(905-957)
[»] chr8 (1 HSPs)
chr8 (58-102)||(13866186-13866230)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 36871684 - 36872079
Alignment:
Q  11 catagggaggaggattcaaatccgtcaatataatcgggatttagaccctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgttaaacaactt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  36871684 catagggaggaggattcaaatccgtcaatataatcgggatttagaccctctaacatgagtaaagtgtaaagtgagaaaatcaagggttgttaaacaactt 36871783  T
Q  111 atggtttgttgctcactttagagcagccgaattcaaggact-attatggannnnnnnnnnnnnnnnaagtttgagaattgaaatgagagttgacttggta 209  Q
    ||||||||||||||||||||||||||| | ||||||||||| | ||| ||                ||||||||||||||||||||||||||||||||||    
T  36871784 atggtttgttgctcactttagagcagcaggattcaaggacttaatatagattttttttt-------aagtttgagaattgaaatgagagttgacttggta 36871876  T
Q  210 aaggaannnnnnnnnacctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgta 309  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36871877 aaggaatttttttt-acctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgta 36871975  T
Q  310 ggccactgaccttatcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctggatttgggcattgagggta 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36871976 ggccactgaccttatcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctggatttgggcattgagggta 36872075  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 225 - 412
Target Start/End: Complemental strand, 37629656 - 37629469
Alignment:
Q  225 acctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgaccttat 324  Q
    |||||||||||||||||||||||||  || ||||| ||  |||| || || ||||| ||||| |  ||||||||||| |  || |||||||||||||| |    
T  37629656 acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgaccttgt 37629557  T
Q  325 catcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctggatttgggcattgagggtagtt 412  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||| ||||||||||    
T  37629556 catcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatggagggtagtt 37629469  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 40296594 - 40296503
Alignment:
Q  291 ccatctttgagcaattgtaggccactgaccttatcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcac 382  Q
    ||||||||||||| ||| |||||||  ||||| ||||| ||||| || |||||||  ||||| ||||| |||||||| || ||||| |||||    
T  40296594 ccatctttgagcatttgaaggccacctaccttgtcatcttggaacagtaggatgacacctcctgcatcagtgtgagctcggagaccattcac 40296503  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 47187644 - 47187696
Alignment:
Q  50 tttagaccctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    |||||| ||||||| | |||||||||||||||||| ||||| ||| |||||||    
T  47187644 tttagatcctctaaagcgagtaaagtgtaaagtgagaaaattaagagttgtta 47187696  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 8927112 - 8926973
Alignment:
Q  225 acctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgaccttat 324  Q
    |||||||||||||||||||||||||  || || |||||  ||||||| || ||||||| ||| ||| |||||||||| |  || || |||||||| || |    
T  8927112 acctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgt 8927013  T
Q  325 catcctggaagagaaggatgattcctccggcatcggtgtg 364  Q
    |||| ||||||||||||||||| || || ||||| |||||    
T  8927012 catcttggaagagaaggatgatgccaccagcatctgtgtg 8926973  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 55528201 - 55528128
Alignment:
Q  225 acctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatcttt 298  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||||||||| || ||||||| ||| |||||||||||    
T  55528201 acctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatcaatccattggccatcttt 55528128  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 19267439 - 19267394
Alignment:
Q  57 cctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||    
T  19267439 cctctaaagtgagtaaagtgtaaattgagaaaatcaagggttgtta 19267394  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 7754283 - 7754238
Alignment:
Q  57 cctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    ||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  7754283 cctctaaagtgagttaagtgtaaaatgagaaaatcaagggttgtta 7754238  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 30969761 - 30969793
Alignment:
Q  70 taaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    ||||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgtta 30969793  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 38602992 - 38603048
Alignment:
Q  46 gggatttagaccctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    ||||||| || ||||||| |||||| ||||||||||  | |||||||||||||||||    
T  38602992 gggatttggatcctctaaagtgagtgaagtgtaaagcaagaaaatcaagggttgtta 38603048  T

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Target: scaffold1625 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 905 - 957
Alignment:
Q  50 tttagaccctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    |||||| ||||||| | | |||||||||||||||||||||||||| |||||||    
T  905 tttagatcctctaaagcgggtaaagtgtaaagtgaaaaaatcaagagttgtta 957  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 13866186 - 13866230
Alignment:
Q  58 ctctaacgtgagtaaagtgtaaagtgaaaaaatcaagggttgtta 102  Q
    |||||| |||| ||||||||||||| | |||||||||||||||||    
T  13866186 ctctaaagtgaataaagtgtaaagtcagaaaatcaagggttgtta 13866230  T

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