View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20236_high_2 (Length: 525)
Name: NF20236_high_2
Description: NF20236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20236_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 207 - 514
Target Start/End: Complemental strand, 27141866 - 27141550
Alignment:
| Q |
207 |
tggttgaaccaattataattcaactccaattcaattcgacttgaacaagattgaaccaaccgacgaacaaaccaattttcgatt---atgattgaactta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27141866 |
tggttgaaccaattataattcaactccaattcaattcgacttgaacaagattgaaccaaccgacgaacaaaccaattttcgattgtaatgattaaactta |
27141767 |
T |
|
| Q |
304 |
ttggtttagtctgatttttaaaacactaattgatcttcaattttagtactaaggcgtggctaaagctggatgaaatcatcttgaaaattgttacactggc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27141766 |
ttggtttagtctgatttttaaaacactaattgatcttcaattttagtactaaggcgtggctaaagctggatgaaatcatcttgaaaattgttacactggc |
27141667 |
T |
|
| Q |
404 |
tcctatttatctcattcattcattatttttgtc------aacagatgccaacatctgacaaatcatttagctcttgattaagcttattgatgaatataaa |
497 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27141666 |
tcctatttatctcatttattcattatttttgtcaacaacaacagatgccaacatctgacaaatcattaagctcttgattaagcttattgatgaatataaa |
27141567 |
T |
|
| Q |
498 |
cttgtttgagccccttt |
514 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27141566 |
cttgtttgagccccttt |
27141550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 27142057 - 27141961
Alignment:
| Q |
15 |
accaacttgaatattcatttcaatattttcaaaactagtaaataggatattgaacggttgagaccatcagttcatgattcaatcaattcaattatag |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27142057 |
accaacttgaatattcatttcaatgttttcaaaactagtaaataggatattgaacggttgagaccatcagttcatgattcaatcagttcaattatag |
27141961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University