View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20236_low_5 (Length: 301)

Name: NF20236_low_5
Description: NF20236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20236_low_5
NF20236_low_5
[»] chr4 (24 HSPs)
chr4 (18-211)||(9538752-9538937)
chr4 (130-227)||(19374124-19374221)
chr4 (130-204)||(9488348-9488422)
chr4 (130-204)||(4546865-4546939)
chr4 (129-199)||(11421792-11421862)
chr4 (226-289)||(4546624-4546687)
chr4 (226-289)||(9538520-9538583)
chr4 (130-202)||(32637287-32637359)
chr4 (226-289)||(19373907-19373970)
chr4 (130-204)||(15462303-15462377)
chr4 (130-204)||(28917201-28917275)
chr4 (130-204)||(34976354-34976428)
chr4 (18-74)||(10725231-10725287)
chr4 (18-74)||(10939000-10939056)
chr4 (108-204)||(19363208-19363304)
chr4 (130-218)||(30039930-30040018)
chr4 (226-289)||(19362971-19363034)
chr4 (226-289)||(30040167-30040230)
chr4 (225-283)||(5524667-5524725)
chr4 (153-202)||(5617159-5617209)
chr4 (226-268)||(9488130-9488172)
chr4 (226-268)||(10677079-10677121)
chr4 (226-268)||(10890719-10890761)
chr4 (226-282)||(24701651-24701707)
[»] chr3 (7 HSPs)
chr3 (111-217)||(26817080-26817186)
chr3 (130-204)||(25978153-25978227)
chr3 (130-204)||(15316602-15316676)
chr3 (130-204)||(21399596-21399670)
chr3 (130-203)||(14147821-14147894)
chr3 (130-204)||(15845962-15846036)
chr3 (243-291)||(15316870-15316918)
[»] chr7 (18 HSPs)
chr7 (130-197)||(18258550-18258617)
chr7 (89-204)||(41680353-41680468)
chr7 (134-204)||(34129375-34129445)
chr7 (130-204)||(10666490-10666564)
chr7 (130-227)||(24442802-24442901)
chr7 (226-289)||(18258801-18258864)
chr7 (226-289)||(19393104-19393167)
chr7 (89-204)||(47166245-47166360)
chr7 (242-289)||(47166553-47166600)
chr7 (130-227)||(31189799-31189896)
chr7 (130-209)||(19389338-19389418)
chr7 (130-197)||(19392855-19392922)
chr7 (226-289)||(34129135-34129198)
chr7 (130-204)||(8465801-8465875)
chr7 (231-289)||(15168977-15169035)
chr7 (130-184)||(19231710-19231764)
chr7 (130-204)||(28131364-28131438)
chr7 (236-289)||(28131123-28131176)
[»] chr5 (13 HSPs)
chr5 (93-204)||(9811122-9811233)
chr5 (93-204)||(12703363-12703474)
chr5 (93-204)||(12764379-12764490)
chr5 (130-196)||(39428249-39428315)
chr5 (18-209)||(28719012-28719211)
chr5 (132-204)||(5098449-5098521)
chr5 (242-289)||(9811426-9811473)
chr5 (242-289)||(12764683-12764730)
chr5 (130-189)||(25804811-25804870)
chr5 (130-204)||(39535983-39536057)
chr5 (93-166)||(7864825-7864898)
chr5 (231-268)||(17282965-17283002)
chr5 (131-204)||(20941829-20941902)
[»] chr2 (6 HSPs)
chr2 (130-204)||(37443968-37444042)
chr2 (130-213)||(15341469-15341552)
chr2 (177-220)||(29801257-29801300)
chr2 (172-218)||(20686887-20686933)
chr2 (130-204)||(24228640-24228714)
chr2 (130-204)||(24763099-24763173)
[»] chr8 (10 HSPs)
chr8 (130-211)||(18836139-18836220)
chr8 (93-204)||(2962316-2962427)
chr8 (130-204)||(6431689-6431763)
chr8 (130-204)||(26652717-26652791)
chr8 (89-204)||(22658878-22658994)
chr8 (242-289)||(2962625-2962672)
chr8 (242-289)||(8781568-8781615)
chr8 (130-204)||(21970135-21970209)
chr8 (130-204)||(26241830-26241904)
chr8 (134-189)||(25612012-25612067)
[»] chr6 (10 HSPs)
chr6 (93-204)||(33317667-33317778)
chr6 (134-204)||(18019259-18019329)
chr6 (226-289)||(10358732-10358795)
chr6 (226-289)||(20736007-20736070)
chr6 (130-204)||(19219321-19219395)
chr6 (89-171)||(14075315-14075397)
chr6 (130-204)||(19734672-19734746)
chr6 (93-166)||(8613753-8613826)
chr6 (130-170)||(27507776-27507816)
chr6 (130-170)||(27524990-27525030)
[»] scaffold0086 (1 HSPs)
scaffold0086 (130-204)||(54566-54640)
[»] chr1 (6 HSPs)
chr1 (130-204)||(43801791-43801865)
chr1 (91-204)||(35936126-35936239)
chr1 (132-204)||(636773-636845)
chr1 (130-204)||(47666911-47666985)
chr1 (130-199)||(28134149-28134218)
chr1 (140-204)||(22613293-22613357)
[»] scaffold0466 (2 HSPs)
scaffold0466 (130-227)||(10311-10408)
scaffold0466 (242-282)||(12643-12683)
[»] scaffold0111 (1 HSPs)
scaffold0111 (130-227)||(27319-27415)
[»] scaffold0389 (1 HSPs)
scaffold0389 (130-204)||(964-1038)
[»] scaffold0112 (1 HSPs)
scaffold0112 (130-204)||(985-1059)
[»] scaffold0069 (1 HSPs)
scaffold0069 (130-204)||(28-102)
[»] scaffold0001 (1 HSPs)
scaffold0001 (130-204)||(138134-138208)
[»] scaffold0375 (1 HSPs)
scaffold0375 (236-289)||(15752-15805)
[»] scaffold0022 (1 HSPs)
scaffold0022 (130-204)||(73620-73694)
[»] scaffold0017 (1 HSPs)
scaffold0017 (130-204)||(128298-128372)
[»] scaffold0031 (1 HSPs)
scaffold0031 (242-282)||(39681-39721)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 9538937 - 9538752
Alignment:
Q  18 gtccacacgaacggttctcctctggttcccactaccagccaagcgatcaaaggttcaagagaattacggttctagggtttctgaaaaatttgcaacctcc 117  Q
    ||||||||||| ||| ||||||||||||| | | | ||||||||||||| | ||||||||||       ||||||||||| | ||||| ||| |||||||    
T  9538937 gtccacacgaatggtgctcctctggttcctagtgctagccaagcgatcatatgttcaagaga-------ttctagggttttt-aaaaacttgtaacctcc 9538846  T
Q  118 gacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccattta 211  Q
    ||||||| |   ||||||||||||||||||||  ||||||| || | ||||||| | |||||| ||||||||||||||||  ||||||||||||    
T  9538845 gacttcagcacaagggttctatttatagaacttcttgtgtgttctgaaagtcagcagtcactactgggcttccgtaagcctgttaacccattta 9538752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 19374221 - 19374124
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagcattttgcaaactaa 227  Q
    ||||||||||||||||||||| | | ||| || ||||||||| |||||||||||| ||||||||||||||||||| |||||||| || ||| ||||||    
T  19374221 agggttctatttatagaactcctagcgtgttctgcaagtcagaaatcactattggtcttccgtaagcccattaacgcatttagccttctgctaactaa 19374124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 9488422 - 9488348
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||| ||||    
T  9488422 agggttatatttatagaactctttgtgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataac 9488348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 4546939 - 4546865
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| || ||||||| ||||||||| | ||||||||||||||| ||||||||| ||||    
T  4546939 agggttctatttatagaactccttatgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataac 4546865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 11421862 - 11421792
Alignment:
Q  129 gagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagccca 199  Q
    |||||||||||||||||||||| | |||||||| ||||||||| | |  ||||||||||||||||||||||    
T  11421862 gagggttctatttatagaactcctagtgtgctctgcaagtcagaagtatctattgggcttccgtaagccca 11421792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 4546687 - 4546624
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| || |||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  4546687 aacacatcattgctatccaagtgacaagaatgtcaagtgatctaacgaaaccttttccatgata 4546624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 9538583 - 9538520
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||||||||||||||||||||||||||||| ||||| ||||||   |||||||||||| |||||    
T  9538583 aacagatcactgttatccaagtgacaagaacgtcaactgatctgacgaaaccttttccatgata 9538520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 32637359 - 32637287
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccatta 202  Q
    |||||| |||||||||||||| |  | ||||| ||||||||| | |||||||||| |||||||||||||||||    
T  32637359 agggttatatttatagaactcctaatatgctctgcaagtcagaagtcactattggacttccgtaagcccatta 32637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 19373970 - 19373907
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| ||||||| || ||||||||||||||||||||||| ||||  |||||||||||| |||||    
T  19373970 aacacatcactgctacccaagtgacaagaatgtcaagtgctctaacgaaaccttttccatgata 19373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 15462377 - 15462303
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  15462377 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 15462303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 28917201 - 28917275
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  28917201 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccagtaac 28917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 34976428 - 34976354
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  34976428 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 34976354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10725231 - 10725287
Alignment:
Q  18 gtccacacgaacggttctcctctggttcccactaccagccaagcgatcaaaggttca 74  Q
    |||||||||||| | |||||||||||||||  ||| ||||||||||||| |||||||    
T  10725231 gtccacacgaacagctctcctctggttcccggtactagccaagcgatcagaggttca 10725287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10939000 - 10939056
Alignment:
Q  18 gtccacacgaacggttctcctctggttcccactaccagccaagcgatcaaaggttca 74  Q
    |||||||||||| | |||||||||||||||  ||| ||||||||||||| |||||||    
T  10939000 gtccacacgaacagctctcctctggttcccggtactagccaagcgatcagaggttca 10939056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 19363304 - 19363208
Alignment:
Q  108 tgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||| ||||||| |   |||||| ||||||||||||||   ||||| ||  || ||||| | ||||||||||||||| ||||||||||||||    
T  19363304 tgcaacctctgacttcagcacaagggttttatttatagaactccaagtgtgttctacacgtcagaattcactattgggcttctgtaagcccattaac 19363208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 30039930 - 30040018
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagcatttt 218  Q
    ||||||||||||||| ||||| | |||||||| ||||||||  | |||||||  |||||||||||||| | ||||   |||||||||||    
T  30039930 agggttctatttatataactcctagtgtgctctgcaagtcaaaagtcactatcaggcttccgtaagcctaataacgagtttagcatttt 30040018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 19363034 - 19362971
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| ||||||| ||||||||| |||||||||||||||| ||||  |||| ||||||| |||||    
T  19363034 aacacatcactgctatccaagttacaagaatgtcaagtgctctaacgaaatcttttccatgata 19362971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 30040167 - 30040230
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| || ||||||||||||||||||||||||||||||   ||||| |||||| |||||    
T  30040167 aacacatcattgctatccaagtgacaagaatgtcaagtgatctgacgaaactttttccatgata 30040230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 5524667 - 5524725
Alignment:
Q  225 taacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttcc 283  Q
    ||||| |||||| |||||||||||||| |||| |||||||||||   ||||||||||||    
T  5524667 taacacatcactcttatccaagtgacaggaatttcaagtgatctgacgaaaccttttcc 5524725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 5617209 - 5617159
Alignment:
Q  153 tgtgtgctccgcaagtca-gtaatcactattgggcttccgtaagcccatta 202  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||||||||    
T  5617209 tgtgtgctctacaagtcaagtaatcactattgggcttcagtaagcccatta 5617159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 9488172 - 9488130
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatct 268  Q
    |||| |||| || ||||||||||||||||||||||||||||||    
T  9488172 aacacatcattgctatccaagtgacaagaatgtcaagtgatct 9488130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 10677079 - 10677121
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatct 268  Q
    |||| ||||||| |||||||||||||||||||||| |||||||    
T  10677079 aacacatcactgctatccaagtgacaagaatgtcatgtgatct 10677121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 10890719 - 10890761
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatct 268  Q
    |||| ||||||| |||||||||||||||||||||| |||||||    
T  10890719 aacacatcactgctatccaagtgacaagaatgtcatgtgatct 10890761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 24701707 - 24701651
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttc 282  Q
    |||| ||||||| |||||||||||||| ||||||| |||||||   |||||||||||    
T  24701707 aacacatcactgctatccaagtgacaaaaatgtcatgtgatctgaagaaaccttttc 24701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 26817186 - 26817080
Alignment:
Q  111 aacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccattt 210  Q
    |||||| |||||||||   ||||||||||| ||||||||| ||||||| || | ||||||| || || ||||||| |||||||||||||||||| |||||    
T  26817186 aacctctgacttcaacacaagggttctattgatagaactccttgtgtgttctgtaagtcagaaaacattattgggattccgtaagcccattaacacattt 26817087  T
Q  211 agcattt 217  Q
    |||||||    
T  26817086 agcattt 26817080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 25978153 - 25978227
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||| ||||||||| | |||| |||||| ||| ||||||||| ||||    
T  25978153 agggttctatttatagaactccttgtgtgctctgcaagtcagaagtcacaattgggtttcagtaagcccaataac 25978227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 15316602 - 15316676
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||| ||| |||| |||| |  |||||||||||||| ||||||||| ||||    
T  15316602 agggttctatttatagaactccttgtgttctctgcaattcagaagccactattgggcttcagtaagcccaataac 15316676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 21399670 - 21399596
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  21399670 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 21399596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 14147894 - 14147821
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaa 203  Q
    |||||| ||||||||||| || |  |||||||  |||||||| | ||||||||| |||||||||||||||||||    
T  14147894 agggttgtatttatagaaatcctattgtgctctacaagtcagaagtcactattgagcttccgtaagcccattaa 14147821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 15845962 - 15846036
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||| |||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  15845962 agggttctctttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 15846036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 15316870 - 15316918
Alignment:
Q  243 caagtgacaagaatgtcaagtgatctattgaaaccttttccttgatatt 291  Q
    |||||||||||||||||||||||| |   |||||||||||| |||||||    
T  15316870 caagtgacaagaatgtcaagtgatatgacgaaaccttttccatgatatt 15316918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 18258550 - 18258617
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcc 197  Q
    ||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||||    
T  18258550 agggttctatttatagaactccttgtgtgctctgcaagtcagaagtcactattgggcttcagtaagcc 18258617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 41680353 - 41680468
Alignment:
Q  89 ctagggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggctt 188  Q
    ||||||||||| |||||  | |||||||  ||||||||   ||||||||||||||||||||| |||||||||| ||||||||| || ||||||||| |||    
T  41680353 ctagggtttctcaaaaacgtacaacctcaaacttcaacactagggttctatttatagaactccttgtgtgctctgcaagtcagaaaccactattggactt 41680452  T
Q  189 ccgtaagcccattaac 204  Q
    |  |||||||| ||||    
T  41680453 cattaagcccaataac 41680468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34129445 - 34129375
Alignment:
Q  134 ttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||| |||||||||| ||||||||| |  |||||||||||||| ||||||||| ||||    
T  34129445 ttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataac 34129375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 10666490 - 10666564
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| | |||||||| ||||||||| | |||||||| ||||||  |||||||| ||||    
T  10666490 agggttctatttatagaactcctagtgtgctctgcaagtcagaagtcactattaggcttcattaagcccaataac 10666564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 24442802 - 24442901
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttcc--gtaagcccattaacccatttagcattttgcaaactaa 227  Q
    ||||||||||||||||||||| |  ||||||  | ||||||| | || ||||||||||| |  |||||||||||||| |||||||| |||||| ||||||    
T  24442802 agggttctatttatagaactcctaatgtgctatggaagtcagaagtccctattgggcttacatgtaagcccattaactcatttagccttttgctaactaa 24442901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 18258801 - 18258864
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| ||||| |||||||||||||||||||||||||||   |||||||||||| |||||    
T  18258801 aacacatcattgttacccaagtgacaagaatgtcaagtgatctgacgaaaccttttccatgata 18258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 19393104 - 19393167
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| || ||||||||||| ||||||||||||||||||  ||||||||||||| |||||    
T  19393104 aacacatcattgctatccaagtgagaagaatgtcaagtgatctgatgaaaccttttccatgata 19393167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 47166245 - 47166360
Alignment:
Q  89 ctagggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggctt 188  Q
    ||||||||||| || ||| |||||||||  |||| | |   ||||||||||||||||||||| |  ||||||| ||||||||| |  |||||||||| ||    
T  47166245 ctagggtttctcaacaatgtgcaacctcaaactttagcactagggttctatttatagaactcctcatgtgctctgcaagtcagaagccactattgggttt 47166344  T
Q  189 ccgtaagcccattaac 204  Q
    | ||||||||| ||||    
T  47166345 cagtaagcccaataac 47166360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 47166553 - 47166600
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||    
T  47166553 ccaagtgacaagaatgtcaagtgatctaacgaaaccttttccatgata 47166600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 31189799 - 31189896
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagcattttgcaaactaa 227  Q
    |||||||||||||||||||||||  ||||||  ||||||||  | ||||| |||||| ||||||| | |||||||   ||||| ||||||| ||||||    
T  31189799 agggttctatttatagaactcttactgtgctttgcaagtcacaagtcactgttgggcctccgtaatctcattaacgagtttagtattttgctaactaa 31189896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 19389418 - 19389338
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtca-gtaatcactattgggcttccgtaagcccattaacccatt 209  Q
    ||||||||||||||||||||  || ||||||| |||||||| ||||||| |  | ||||||  ||||||||||||||||||    
T  19389418 agggttctatttatagaactacttatgtgctcagcaagtcaggtaatcattcctaggcttctataagcccattaacccatt 19389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 19392855 - 19392922
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcc 197  Q
    ||||||||||||||||||| | | ||||||||  |||||||| | ||||| |||||||||||| ||||    
T  19392855 agggttctatttatagaacacctagtgtgctctacaagtcagaagtcactgttgggcttccgtcagcc 19392922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 34129198 - 34129135
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| || |||||||||||||||||||||||||||| |   |||||||||||| |||||    
T  34129198 aacacatcattgctatccaagtgacaagaatgtcaagtgatatgacgaaaccttttccatgata 34129135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 8465875 - 8465801
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||  |  ||||||||| ||||  |||||||| ||||    
T  8465875 agggttctatttatagaactccttgtgtgctatgcaagtcataagccactattggacttcactaagcccaataac 8465801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 15168977 - 15169035
Alignment:
Q  231 atcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||||| || |||||||||||||||||||||||||||   ||||| |||||| |||||    
T  15168977 atcactgctacccaagtgacaagaatgtcaagtgatctgacgaaactttttccatgata 15169035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 19231764 - 19231710
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgg 184  Q
    ||||||||||||||||||||| |||||||||| | ||||||| |  |||||||||    
T  19231764 agggttctatttatagaactccttgtgtgctctgtaagtcagaagccactattgg 19231710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 28131438 - 28131364
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||  | | |||||| ||||||||  | ||||||||||||||| |||| |||| ||||    
T  28131438 agggttctatttatagaacttctagcgtgctcagcaagtcaaaagtcactattgggcttcagtaaccccaataac 28131364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 28131176 - 28131123
Alignment:
Q  236 tgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||| ||||||||||||||||||||||||| |   |||||||||||| |||||    
T  28131176 tgttacccaagtgacaagaatgtcaagtgatatgacgaaaccttttccatgata 28131123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 9811122 - 9811233
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgt 192  Q
    ||||||| |||||| |||||||||  ||||||     ||||||||||||||||||||| |||||||||| ||||||||| |  |||||||||||||| ||    
T  9811122 ggtttctcaaaaatgtgcaacctcaaacttcagtaatagggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagt 9811221  T
Q  193 aagcccattaac 204  Q
    ||||||| ||||    
T  9811222 aagcccaataac 9811233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 12703363 - 12703474
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgt 192  Q
    ||||||| |||||| |||||||||  ||||||     ||||||||||||||||||||| |||||||||| ||||||||| |  |||||||||||||| ||    
T  12703363 ggtttctcaaaaatgtgcaacctcaaacttcagtaatagggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagt 12703462  T
Q  193 aagcccattaac 204  Q
    ||||||| ||||    
T  12703463 aagcccaataac 12703474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 12764379 - 12764490
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgt 192  Q
    ||||||| |||||| |||||||||  ||||||     ||||||||||||||||||||| |||||||||| ||||||||| |  |||||||||||||| ||    
T  12764379 ggtttctcaaaaatgtgcaacctcaaacttcagtaatagggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagt 12764478  T
Q  193 aagcccattaac 204  Q
    || |||| ||||    
T  12764479 aatcccaataac 12764490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 39428315 - 39428249
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagc 196  Q
    ||||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||| ||||||    
T  39428315 agggttctatttatagaactccttgtgtgttctgcaagtcagaagtcactattgggcttcagtaagc 39428249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 28719012 - 28719211
Alignment:
Q  18 gtccacacgaacggttctcctctggttcccactaccagccaagcgatcaaaggttcaa-gagaattacggttc------tagggtttctg-aaaaatttg 109  Q
    ||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||| |  |||||||| ||||       ||||||||||  ||||| |||    
T  28719012 gtccacacgaacggttctcctctagttcccaatgctagccaagcgatcagaggttgagtgagaattagggtttcaactttagggtttctccaaaaacttg 28719111  T
Q  110 caacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtca-gtaatcactattgggcttccgtaagcccattaacccat 208  Q
     ||| ||  ||||||||   || |||||||||||||||||  |||||||||| ||||  || |||||||||||||||||||  ||||||| |||||||||    
T  28719112 taac-tctaacttcaacacaagagttctatttatagaactacttgtgtgctctgcaaaccaagtaatcactattgggcttcaataagcccgttaacccat 28719210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 5098521 - 5098449
Alignment:
Q  132 ggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||| | |||||||| ||||||||| | |||||||||| |||| ||||||||| ||||    
T  5098521 ggttctatttatagaactcctagtgtgctctgcaagtcagaagtcactattggacttcagtaagcccaataac 5098449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 9811426 - 9811473
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||    
T  9811426 ccaagtgacaagaatgtcaagtgatctgacgaaaccttttccatgata 9811473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 12764683 - 12764730
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||    
T  12764683 ccaagtgacaagaatgtcaagtgatctgacgaaaccttttccatgata 12764730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 25804811 - 25804870
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttc 189  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||    
T  25804811 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttc 25804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 39536057 - 39535983
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||||||||||||||||   |||||||  |||||||||   ||| |||||||||||| |||||||| ||||    
T  39536057 agggttctatttatagaactccaagtgtgctatgcaagtcagatttcagtattgggcttccataagcccaataac 39535983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 7864825 - 7864898
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaa 166  Q
    ||||||| |||||  |||||||||  |||||| |   ||||||||||||||||||||| |||||||||| ||||    
T  7864825 ggtttctcaaaaacgtgcaacctcaaacttcagcaatagggttctatttatagaactccttgtgtgctctgcaa 7864898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 17282965 - 17283002
Alignment:
Q  231 atcactgttatccaagtgacaagaatgtcaagtgatct 268  Q
    ||||||| || |||||||||||||||||||||||||||    
T  17282965 atcactgctacccaagtgacaagaatgtcaagtgatct 17283002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 20941902 - 20941829
Alignment:
Q  131 gggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||| |||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  20941902 gggttatatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcattaagcccaataac 20941829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 37444042 - 37443968
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||| ||||||||||||| | |||||||| ||||||| | | ||| ||||||||||||||||||||||||||    
T  37444042 agggttcaatttatagaactcctagtgtgctctgcaagtcggaagtcattattgggcttccgtaagcccattaac 37443968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 15341469 - 15341552
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagc 213  Q
    |||||||||||||||||| || | ||||| || ||||||||| ||| | ||||||||| |||||| ||||||||| ||||||||    
T  15341469 agggttctatttatagaattcctagtgtgttctgcaagtcagaaattaatattgggctaccgtaaccccattaacgcatttagc 15341552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 29801300 - 29801257
Alignment:
Q  177 actattgggcttccgtaagcccattaacccatttagcattttgc 220  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  29801300 actattggacttccgtaagcccattaacccatttagcattttgc 29801257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 20686887 - 20686933
Alignment:
Q  172 taatcactattgggcttccgtaagcccattaacccatttagcatttt 218  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  20686887 taatcactactggacttccgtaagcccattaacccatttagcctttt 20686933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 24228640 - 24228714
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||| ||||||||  |  ||||||||| ||||  |||||||| ||||    
T  24228640 agggttctatttatagaactccttgtgtgctctgcaagtcaaaagccactattggacttcattaagcccaataac 24228714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 24763099 - 24763173
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| | |||||||  ||||||||  | |||||||| ||||| |||||||||| ||||    
T  24763099 agggttctatttatagaactcctagtgtgctttgcaagtcaaaagtcactattaggctttcgtaagcccaataac 24763173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 18836220 - 18836139
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccattta 211  Q
    |||||||||||||||||||||   ||||| || |||||| || | ||| |||||||||||||||||||||||||| ||||||    
T  18836220 agggttctatttatagaactccaagtgtgttctgcaagttagaattcaatattgggcttccgtaagcccattaactcattta 18836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 2962316 - 2962427
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgt 192  Q
    ||||||| |||||  |||||||||  |||||| |   ||||||||||||||||||||| || |||||||  |||||||| |  |||||||||||||| ||    
T  2962316 ggtttctaaaaaacgtgcaacctcaaacttcagcaatagggttctatttatagaactccttatgtgctcttcaagtcagaagccactattgggcttcagt 2962415  T
Q  193 aagcccattaac 204  Q
    ||||||| ||||    
T  2962416 aagcccaataac 2962427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 6431763 - 6431689
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| ||||||||||  |||||||| |  |||||||||| ||| ||||||||| ||||    
T  6431763 agggttctatttatagaactccttgtgtgctcttcaagtcagaagccactattgggtttcagtaagcccaataac 6431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 26652717 - 26652791
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  26652717 agggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattggacttcactaagcccaataac 26652791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 22658878 - 22658994
Alignment:
Q  89 ctagggtttctg-aaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggct 187  Q
    |||||||||||  |||||| |||||||||  |||||| | | ||||||||||||||||||||| ||||||||||  |||||||| |  ||||||||  ||    
T  22658878 ctagggtttctccaaaaatgtgcaacctcaaacttcagcattagggttctatttatagaactccttgtgtgctctacaagtcagaagccactattgaact 22658977  T
Q  188 tccgtaagcccattaac 204  Q
    ||  |||||||| ||||    
T  22658978 tcattaagcccaataac 22658994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 2962625 - 2962672
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||    
T  2962625 ccaagtgacaagaatgtcaagtgatctaacgaaaccttttccatgata 2962672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 8781568 - 8781615
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  8781568 ccaagtgacaagaatgtcaagtgatctaacgaaacattttccttgata 8781615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 21970209 - 21970135
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  21970209 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 21970135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 26241904 - 26241830
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  26241904 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 26241830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 25612067 - 25612012
Alignment:
Q  134 ttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttc 189  Q
    ||||||||||||||||| |||||||||  ||||||||| | |||||||||| ||||    
T  25612067 ttctatttatagaactccttgtgtgctatgcaagtcagaagtcactattggacttc 25612012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 33317778 - 33317667
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgt 192  Q
    ||||||| |||||  |||||||||  |||||| |   ||||||||||||||||||||  |||||||||| ||||||||| |  |||||| ||||||| ||    
T  33317778 ggtttctcaaaaacgtgcaacctcaaacttcagcaatagggttctatttatagaacttcttgtgtgctctgcaagtcagaagccactatggggcttcagt 33317679  T
Q  193 aagcccattaac 204  Q
    ||||||| ||||    
T  33317678 aagcccaataac 33317667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 18019259 - 18019329
Alignment:
Q  134 ttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||||||||||||||||||||||  ||||||||| | |||||||||| ||||  |||||||| ||||    
T  18019259 ttctatttatagaactctttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataac 18019329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 10358732 - 10358795
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||   |||||||||||| |||||    
T  10358732 aacaaatcactgctatccaagtgacaagaatgccaagtgatctgacgaaaccttttccatgata 10358795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 20736007 - 20736070
Alignment:
Q  226 aacagatcactgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    |||| |||| || ||||||||||||||||||||||||||||||   |||||||||||| |||||    
T  20736007 aacacatcattgctatccaagtgacaagaatgtcaagtgatctgacgaaaccttttccatgata 20736070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 19219395 - 19219321
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||||||||||||||||   ||||| || ||||||||| | | |||||||| ||| |||||||||||||||    
T  19219395 agggttctatttatagaactccaagtgtgttctgcaagtcagaatttactattggactttcgtaagcccattaac 19219321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 14075397 - 14075315
Alignment:
Q  89 ctagggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcag 171  Q
    ||||||||||| |||||| |  ||||||  |||||| |   ||||||||||||||||||||| ||||||| || |||||||||    
T  14075397 ctagggtttctcaaaaatgtaaaacctcaaacttcagcactagggttctatttatagaactccttgtgtgttctgcaagtcag 14075315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 19734672 - 19734746
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||| ||||||||| | ||| ||||  ||||| || | | | ||||||||||||||||||||||||||    
T  19734672 agggttctattcatagaactcctagtgagctctccaagtaagaagtaattattgggcttccgtaagcccattaac 19734746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 8613826 - 8613753
Alignment:
Q  93 ggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaa 166  Q
    ||||||| |||||  |||||||||  |||||| |   ||||||||||||||||||||| |||||||||| ||||    
T  8613826 ggtttctcaaaaacgtgcaacctcaaacttcagcaatagggttctatttatagaactccttgtgtgctctgcaa 8613753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 27507776 - 27507816
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtca 170  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  27507776 agggttctatttatagaactctttatgtgctttgcaagtca 27507816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 27524990 - 27525030
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtca 170  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  27524990 agggttctatttatagaactctttatgtgctttgcaagtca 27525030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 54640 - 54566
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||||||||||||| || | |||||||  ||||||||| ||||||||||||||||| ||||| ||| ||||    
T  54640 agggttctatttatagaaatcctagtgtgctttgcaagtcagaaatcactattgggcttcagtaagtccaataac 54566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 43801791 - 43801865
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| | |||||||||  ||||  |||||||||||||    
T  43801791 agggttctatttatagaactccttgtgtgctatgcaagtcagaagtcactattgtacttctctaagcccattaac 43801865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 35936239 - 35936126
Alignment:
Q  91 agggtttctgaaaaatttgcaacctccgacttcaacgtgagggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttcc 190  Q
    ||||||||| |||||| |||||| ||  |||||| |   | ||||||||||||||||||| |||||||||  ||||||||| | |||||||||| ||||     
T  35936239 agggtttctcaaaaatgtgcaacatcaaacttcagcactatggttctatttatagaactccttgtgtgctttgcaagtcagaagtcactattggacttca 35936140  T
Q  191 gtaagcccattaac 204  Q
     |||||||| ||||    
T  35936139 ctaagcccaataac 35936126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 636845 - 636773
Alignment:
Q  132 ggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||| | |||||||| ||||||||| | |||||||| ||||||  |||||||| ||||    
T  636845 ggttctatttatagaactcctagtgtgctctgcaagtcagaagtcactattaggcttcattaagcccaataac 636773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 47666911 - 47666985
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  47666911 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 47666985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 28134149 - 28134218
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagccca 199  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  ||||||||    
T  28134149 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagccca 28134218  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 22613357 - 22613293
Alignment:
Q  140 ttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||| |||||||||  ||||||||| | |||||||||| ||||  |||||||| ||||    
T  22613357 ttatagaactccttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataac 22613293  T

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Target: scaffold0466 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 10311 - 10408
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagcattttgcaaactaa 227  Q
    ||||||||| ||||||||||| | |||||||  ||||||||| | |||||||||| ||||||||||| || ||||   ||||| ||||||| ||||||    
T  10311 agggttctacttatagaactcctagtgtgctttgcaagtcagaagtcactattggccttccgtaagcacaataacgagtttagtattttgctaactaa 10408  T

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Target: scaffold0466; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 12643 - 12683
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttc 282  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  12643 ccaagtgacaagaatgtcaagtgatctgacgaaaccttttc 12683  T

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Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 27415 - 27319
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaacccatttagcattttgcaaactaa 227  Q
    |||||||||||||||||| |  | |||||||| ||||||||| | ||||||||||||||||||||||| | ||||   |||||  |||||||||||||    
T  27415 agggttctatttatagaaattctagtgtgctctgcaagtcag-agtcactattgggcttccgtaagccgaataacgagtttagtcttttgcaaactaa 27319  T

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Target: scaffold0389 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 1038 - 964
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  1038 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 964  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 1059 - 985
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  1059 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 985  T

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Target: scaffold0069 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 102 - 28
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  102 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 28  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 138134 - 138208
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  138134 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 138208  T

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Target: scaffold0375 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 15805 - 15752
Alignment:
Q  236 tgttatccaagtgacaagaatgtcaagtgatctattgaaaccttttccttgata 289  Q
    ||||||||||||||||||||||| | ||||||||  |||||||||||| |||||    
T  15805 tgttatccaagtgacaagaatgtgatgtgatctaacgaaaccttttccgtgata 15752  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 73620 - 73694
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||| |||||||||||||| |||||||||  ||||||||| |  ||||||||| ||||  |||||||| ||||    
T  73620 agggttttatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataac 73694  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 128372 - 128298
Alignment:
Q  130 agggttctatttatagaactctttgtgtgctccgcaagtcagtaatcactattgggcttccgtaagcccattaac 204  Q
    |||||||||||||||||| || || ||||||| |||||| || | |||||||||| ||||  |||||||| ||||    
T  128372 agggttctatttatagaattccttatgtgctctgcaagttagaagtcactattggacttcattaagcccaataac 128298  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 39681 - 39721
Alignment:
Q  242 ccaagtgacaagaatgtcaagtgatctattgaaaccttttc 282  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  39681 ccaagtgacaagaatgtcaagtgatctgatgaaactttttc 39721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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