View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20236_low_8 (Length: 237)
Name: NF20236_low_8
Description: NF20236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20236_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 17530826 - 17530615
Alignment:
| Q |
1 |
tttgattcgcattgcacgtggttggataacaatataattcaattgaaatgtgtttccactttcaaagcttatgtttctatgctagaaaatggatttctat |
100 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17530826 |
tttgatacgctttgcacatggttggataacaatataatttaattgaactgtgtttccactttcaaagcttatgtttctatgctagaaaatggatttctat |
17530727 |
T |
|
| Q |
101 |
ttgctccattccataatctatgtatttacgtacccaacacatcgatggccattgaaaatcaaaatatgcattgaagtttggatcatccaatcttcgatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17530726 |
ttgctccattccataatctatgtatttatgcacccaacacatcgatggccattgaaaatcaaaatatgcattgaagtttggatcatccaatcttcgatac |
17530627 |
T |
|
| Q |
201 |
aacaaccatcaa |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17530626 |
aacaaccatcaa |
17530615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 17515666 - 17515453
Alignment:
| Q |
9 |
gcattgcacgtggttggataacaatataattcaattgaaatgtgtttccactttcaaagcttatgtttctatgctagaaaatggatttctatttgctcca |
108 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| ||||||| |||||||||||||| |||| | |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
17515666 |
gcattgcacaaggttgaataacaatagaatttaattgaactgtgtttccacttttaaagttcatgtttctatgctagaaaatggatttggatttcctcca |
17515567 |
T |
|
| Q |
109 |
ttccataatctatgtatttacgtacccaacacatcgatggccattgaaaatcaaaatatgcattgaagtttggatcatccaatcttcgatacaacaacca |
208 |
Q |
| |
|
|| | |||| ||| |||||| | ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
17515566 |
tttcgcaatccatgcatttacacagccagcacatcgatggccattaaaaatcaaagtatgcattgaagtttggatcatgctatcttcgatacaacgacca |
17515467 |
T |
|
| Q |
209 |
tcaacgtgcttact |
222 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
17515466 |
tcgacgtacttact |
17515453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 16857413 - 16857212
Alignment:
| Q |
21 |
gttggataacaatataattcaattgaaatgtgtttccactttcaaagcttatgtttctatgctagaaaatggatttctatttgctccattccataatcta |
120 |
Q |
| |
|
||||| ||||| || |||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||| | |
|
|
| T |
16857413 |
gttggttaacagtagaatttaattgaaatgtgtttccattttcaaagctcatgtttctatgctagagaatggatttggatttgctccattccgcaatcca |
16857314 |
T |
|
| Q |
121 |
tgtatttacgtacccaacacatcgatggccattgaaaatcaaaatatgcattgaagtttggatcatccaatcttcgatacaacaaccatcaacgtgctta |
220 |
Q |
| |
|
|| |||||| | ||| ||| || ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| |||| |
|
|
| T |
16857313 |
tgcatttacacagccagcacgtcaatgtccattaaaaatcaaaatatgcattgaagtttggattgtacaatcttcgatacagcaaccatcgacgtactta |
16857214 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
16857213 |
ct |
16857212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 40505523 - 40505560
Alignment:
| Q |
156 |
aaatcaaaatatgcattgaagtttggatcatccaatct |
193 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40505523 |
aaatcaaaatatgcattgaaatttggatcgtccaatct |
40505560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University