View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20236_low_9 (Length: 217)
Name: NF20236_low_9
Description: NF20236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20236_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 37788903 - 37789025
Alignment:
| Q |
18 |
tatatattatgtaattgtccataccaattgagtcaaactaacgagaacgttggatatgtattcttacaaattacatccaatcatttaatgtggtatgtta |
117 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37788903 |
tatatactatgta-ttgtccctaccaattgagtcaaactaacgaggacgttggatatgtattcttacaaattatatccaatcatttaatgtggtatgtta |
37789001 |
T |
|
| Q |
118 |
cttttaatatttgattaatttgcc |
141 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37789002 |
cttttaatatttgattaatttgcc |
37789025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University