View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_high_14 (Length: 239)
Name: NF20237_high_14
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 42179191 - 42178969
Alignment:
| Q |
17 |
aaatatgatatgttttgcacagcctttaatgtagctaagaattataggaatgacacttgtgctaccaaaattaaacgtcctaaattataatattgtagct |
116 |
Q |
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| T |
42179191 |
aaatctgacatgttttgcacagcctttaatgtagctaagaattataggaatgacacttgtgctaccaaaattaaacggcctaaattataatattgtagct |
42179092 |
T |
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| Q |
117 |
cacggacacaagtagaagaataggatgcaaaacaaggtggagaatacaccaattttggcctctagcattaagagagtggcattttgtgtgaatctctaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42179091 |
cacggacacaagtagaagaataggatgcaaaacaaggtggagaatacaccaattttggcctctagcattaagagagtggcattttgtgtgaatctctaac |
42178992 |
T |
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| Q |
217 |
aacttggaagaattaatacactc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
42178991 |
aacttggaagaattaatacactc |
42178969 |
T |
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