View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_high_5 (Length: 437)
Name: NF20237_high_5
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 40879957 - 40879689
Alignment:
| Q |
18 |
agttgtgaggtatatatattggtggagtatacttacaaggattagtgggaaatgtgagggacataacataagagtatacttacaagagagaaatgaagga |
117 |
Q |
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| T |
40879957 |
agttgtgaggtgtatatattggtggagtatacttacaaggattagtgggaaatgtgagggacataacataagagtatacttacaagagagaaatgaagga |
40879858 |
T |
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| Q |
118 |
gttgtgatgcatgaagagataggtgaagcagaagttgttgctttaatttcaataaatcttctatgttggaacaagtttattgtttttagaataagaagaa |
217 |
Q |
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| T |
40879857 |
gttgtgatgcatgaagagataggtgaagcaaaagttgtcgc-----tttcaataaatcttctatgttggaacaagtttattgtttttagaataagaagaa |
40879763 |
T |
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| Q |
218 |
gtattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaatatattgtgaga |
291 |
Q |
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| T |
40879762 |
gtattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaatatattgtgaga |
40879689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 40879635 - 40879521
Alignment:
| Q |
287 |
tgagaagtgtgataaaattactccaagaggccaccaaattgtgaaagaggtgaaacatatataatcaatggagatccaaacaaaaacaataatatatttg |
386 |
Q |
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| T |
40879635 |
tgagaagtgtgataaaattactccaagaggccaccaaattgtgaaagaggtgaaacatatataatcaatggagatccaaacaaaaacaataatatatttg |
40879536 |
T |
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| Q |
387 |
tacacaaccgtggcc |
401 |
Q |
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| T |
40879535 |
tacacaaccgtggcc |
40879521 |
T |
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