View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_high_6 (Length: 417)
Name: NF20237_high_6
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 47582674 - 47583078
Alignment:
| Q |
13 |
aatttttcccttctcacttccactaaaatttcaggcaagtccaaatttcatacaatttattctccttgtgttgctgtgtcttctgattcaagctagatgc |
112 |
Q |
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| T |
47582674 |
aatttttcccttctcacttccactaaaatttcaggcaagtccaaatttcatacaatttattctccttgtgttgctgtgtcttctgattcaagctagatgc |
47582773 |
T |
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| Q |
113 |
atacgtaatgcattgtctacattgtaactttgatgttttatttatacgtaaatcattgtggaggagaactttgatcaatattgagaattgcttattggnn |
212 |
Q |
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| T |
47582774 |
atacgtaatgcattgtctacattgtaactttgatgttttatttatacgtaaatcattgtggaggagaactttgatcaatattgagaattgcttattggaa |
47582873 |
T |
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| Q |
213 |
nnnnnncctaagtcgcacgttcagaagagttaaggggtaaagaagcttagaagtgtgcgaggatgtgttaaacttaatatagaaaacttatatgctaaca |
312 |
Q |
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| T |
47582874 |
aaaaaacctaagtcgcacgatcagaagagttaaggggtaaagaagcttagaagtgtgcgaggatgtgttaaacttaatatagaaaacttatatgctaaca |
47582973 |
T |
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| Q |
313 |
gagtttattcatcaaggctcttggagcggatgtcacgtcatggctctgataacatgttaatgctgaaaatctgaatgaaagattagttttgtctatgctc |
412 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582974 |
gagtttattcatcaaggctcttcgagcggatgtcatgtcatggctctgataacatgttaatgctgaaaatctgaatgaaagattagttttgtctatgctc |
47583073 |
T |
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| Q |
413 |
aaagg |
417 |
Q |
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| T |
47583074 |
aaagg |
47583078 |
T |
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