View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_high_8 (Length: 328)
Name: NF20237_high_8
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 20815216 - 20814905
Alignment:
| Q |
17 |
tcaaacacaaatgatataaaagtacgttgaatatcatatttggccattttaataaaagagattttaaaggatgcatgtctcagagtaaaagtcttagccc |
116 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| || |
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| T |
20815216 |
tcaaacacaaatgatatgaaagtacgttaaatattatatttggccattttaataaaagagattttgaaggctgcatgtgtcacagtaaaagtcttagtcc |
20815117 |
T |
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| Q |
117 |
ccaattccaaaactaggaaacataagtcaagtccacgtatgtatgtttttctattgtccatccaaacacaagaacatcttaggttaagagtgatattcgt |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20815116 |
ccaattccacaactaggaaacataagtcaagtccacgtatgtatgtttttctattgtccatccaaacacaagaacatcttaggttaagagtgatattcgt |
20815017 |
T |
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| Q |
217 |
aatgtaattattttttacaccgtcaatcaattgtaatcctcgtataagtatttctttgaatggcaatcataatcttcatattattatattcatttaactt |
316 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
20815016 |
agtgtaattattttttacaccgtcgatcaattgtaatcctcgtatatgtatttttttgaatgacaatcataatcttcatattattataatcatttaactt |
20814917 |
T |
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| Q |
317 |
taatcataacta |
328 |
Q |
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|||||||||||| |
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| T |
20814916 |
taatcataacta |
20814905 |
T |
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