View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20237_low_1 (Length: 889)

Name: NF20237_low_1
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20237_low_1
NF20237_low_1
[»] chr6 (11 HSPs)
chr6 (1-456)||(29063554-29064002)
chr6 (1-456)||(29118408-29118856)
chr6 (451-876)||(29100133-29100558)
chr6 (451-876)||(29117051-29117476)
chr6 (451-876)||(29062197-29062622)
chr6 (353-457)||(7365096-7365200)
chr6 (262-344)||(29101463-29101545)
chr6 (262-344)||(29121102-29121184)
chr6 (39-158)||(29880099-29880214)
chr6 (212-245)||(29880012-29880045)
chr6 (362-438)||(19694611-19694687)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-245)||(58038-58282)
[»] chr4 (6 HSPs)
chr4 (353-454)||(26861401-26861502)
chr4 (608-676)||(14065859-14065927)
chr4 (358-461)||(3121207-3121310)
chr4 (354-461)||(35292024-35292131)
chr4 (357-431)||(35033863-35033937)
chr4 (357-431)||(46944055-46944129)
[»] chr1 (6 HSPs)
chr1 (353-454)||(42117192-42117293)
chr1 (353-454)||(49741301-49741402)
chr1 (378-461)||(38761084-38761167)
chr1 (378-430)||(24020582-24020634)
chr1 (362-456)||(16302758-16302852)
chr1 (356-433)||(50139607-50139684)
[»] chr8 (6 HSPs)
chr8 (353-454)||(11354754-11354855)
chr8 (356-456)||(24944974-24945074)
chr8 (394-457)||(36274288-36274351)
chr8 (368-457)||(13476786-13476875)
chr8 (357-456)||(42025396-42025495)
chr8 (356-433)||(29844245-29844322)
[»] chr3 (6 HSPs)
chr3 (353-457)||(14567827-14567931)
chr3 (356-457)||(30813344-30813445)
chr3 (526-629)||(24207430-24207533)
chr3 (354-456)||(39439903-39440005)
chr3 (354-431)||(25909351-25909428)
chr3 (357-431)||(25045381-25045455)
[»] chr5 (3 HSPs)
chr5 (353-454)||(32232989-32233090)
chr5 (354-456)||(11617218-11617320)
chr5 (357-431)||(30084909-30084983)
[»] chr7 (2 HSPs)
chr7 (394-457)||(33446969-33447032)
chr7 (357-430)||(23417262-23417335)
[»] scaffold0022 (2 HSPs)
scaffold0022 (354-433)||(44162-44241)
scaffold0022 (354-433)||(77883-77962)
[»] chr2 (1 HSPs)
chr2 (354-433)||(10354262-10354341)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 29064002 - 29063554
Alignment:
Q  1 attcttcatcgtcaattgtgagttctactaaacttactatcaatatccaccaactcagtaagcttgcagtctttgcatatattatggtttactattttca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29064002 attcttcatcgtcaattgtgagttctactaaacttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatggtttactattttca 29063903  T
Q  101 ctatctttgatcagaaatcctttatccaaccaacagtcatcccatgcacgaacacaagttgtgccaaattcttccataagccagaatcacttgacttagc 200  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  29063902 ctatctttgatcagaaatcctttatccaacca-------tcccatgcacgaacacaagttgtgccaagttcttccataagtcagaatcacttggcttagc 29063810  T
Q  201 tattaccatatccaatgctatattgcttccatcatattttcctttaaaaaaccttagaaattgtcaaataccctctccttctgttttgattgcttgtcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29063809 tattaccatatccaatgctatattgcttccatcatattttcctttaaaaaaccttagaaattgtcaaataccctctccttctgttttgattgcttgtcaa 29063710  T
Q  301 ggatattgagtataagccttcatctatgatcttgagttggttaattatgatcttgggtggtattggatggaatgagatccattgtattccatcccactcc 400  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29063709 ggatattgagtttaagccttcatctatgatcttgagttggttaattatgatcttggctggtattggatggaatgagatccattgtattccatcccactcc 29063610  T
Q  401 attcactttttgcaaatccaaacaatggaatataattatgtaccactccattccat 456  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29063609 attcactttttgcaaatccaaacaatggaatataattatgcaccactccattccat 29063554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 29118856 - 29118408
Alignment:
Q  1 attcttcatcgtcaattgtgagttctactaaacttactatcaatatccaccaactcagtaagcttgcagtctttgcatatattatggtttactattttca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29118856 attcttcatcgtcaattgtgagttctactaaacttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatggtttactattttca 29118757  T
Q  101 ctatctttgatcagaaatcctttatccaaccaacagtcatcccatgcacgaacacaagttgtgccaaattcttccataagccagaatcacttgacttagc 200  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  29118756 ctatctttgatcagaaatcctttatccaacca-------tcccatgcacgaacacaagttgtgccaagttcttccataagtcagaatcacttggcttagc 29118664  T
Q  201 tattaccatatccaatgctatattgcttccatcatattttcctttaaaaaaccttagaaattgtcaaataccctctccttctgttttgattgcttgtcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118663 tattaccatatccaatgctatattgcttccatcatattttcctttaaaaaaccttagaaattgtcaaataccctctccttctgttttgattgcttgtcaa 29118564  T
Q  301 ggatattgagtataagccttcatctatgatcttgagttggttaattatgatcttgggtggtattggatggaatgagatccattgtattccatcccactcc 400  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29118563 ggatattgagtttaagccttcatctatgatcttgagttggttaattatgatcttggctggtattggatggaatgagatccattgtattccatcccactcc 29118464  T
Q  401 attcactttttgcaaatccaaacaatggaatataattatgtaccactccattccat 456  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29118463 attcactttttgcaaatccaaacaatggaatataattatgcaccactccattccat 29118408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 451 - 876
Target Start/End: Complemental strand, 29100558 - 29100133
Alignment:
Q  451 ttccatcccacagcaaggagatatcatgttaaaattaactttaaactacatttctatacttaaactagggggaacaaagctttaattttgattcacttca 550  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  29100558 ttccatcccacagcaaggagatatcatgttaaaattaacttaaaactacttttctatatttaaactagggggaacaaagctgtaattttgattcacttca 29100459  T
Q  551 ctaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 650  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29100458 cttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 29100359  T
Q  651 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaatctcacaactttacatccag 750  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29100358 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaatctcacaactttacatccag 29100259  T
Q  751 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctt 850  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29100258 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaagtgcaaagtcagcactgattgtaaaaaatagaatcatgctt 29100159  T
Q  851 tctaaaaatcattcaagctccaaact 876  Q
    ||||||||||||||||||||||||||    
T  29100158 tctaaaaatcattcaagctccaaact 29100133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 451 - 876
Target Start/End: Complemental strand, 29117476 - 29117051
Alignment:
Q  451 ttccatcccacagcaaggagatatcatgttaaaattaactttaaactacatttctatacttaaactagggggaacaaagctttaattttgattcacttca 550  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  29117476 ttccatcccacagcaaggagatatcatgttaaaattaacttaaaactacttttctatatttaaactagggggaacaaagctgtaattttgattcacttca 29117377  T
Q  551 ctaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 650  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29117376 cttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 29117277  T
Q  651 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaatctcacaactttacatccag 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29117276 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaaactcacaactttacatccag 29117177  T
Q  751 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctt 850  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29117176 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaactgcaaagtcagcactgattgtaaaaaatagaatcatgctt 29117077  T
Q  851 tctaaaaatcattcaagctccaaact 876  Q
    ||||||||||||||||||||||||||    
T  29117076 tctaaaaatcattcaagctccaaact 29117051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 451 - 876
Target Start/End: Complemental strand, 29062622 - 29062197
Alignment:
Q  451 ttccatcccacagcaaggagatatcatgttaaaattaactttaaactacatttctatacttaaactagggggaacaaagctttaattttgattcacttca 550  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  29062622 ttccatcccacagcaaggagatatcatgttaaaattaacttaaaactacttttctatatttaaactagggggaacaaagctgtaattttgattcacttca 29062523  T
Q  551 ctaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 650  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29062522 cttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaaccttattaagtcttaaaccaaacaaaagc 29062423  T
Q  651 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaatctcacaactttacatccag 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29062422 aaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttgggaaatcaatatatcctaaaaactcacaactttacatccag 29062323  T
Q  751 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctt 850  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29062322 gtttatacatgttctataaactatttaaaccaatatttcagataaatagccattcaaaaatgcaaagtcagcactgattgtaaaaaatagaatcatgctt 29062223  T
Q  851 tctaaaaatcattcaagctccaaact 876  Q
    ||||||||||||||||||||||||||    
T  29062222 tctaaaaatcattcaagctccaaact 29062197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 7365096 - 7365200
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7365096 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 7365195  T
Q  453 ccatc 457  Q
    |||||    
T  7365196 ccatc 7365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 29101545 - 29101463
Alignment:
Q  262 tgtcaaataccctctccttctgttttgattgcttgtcaaggatattgagtataagccttcatctatgatcttgagttggttaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29101545 tgtcaaataccctctccttctgttttgattgcttgtcaaggatattgagtttaagccttcatctatgatcttgagttggttaa 29101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 29121184 - 29121102
Alignment:
Q  262 tgtcaaataccctctccttctgttttgattgcttgtcaaggatattgagtataagccttcatctatgatcttgagttggttaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29121184 tgtcaaataccctctccttctgttttgattgcttgtcaaggatattgagtttaagccttcatctatgatcttgagttggttaa 29121102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 29880214 - 29880099
Alignment:
Q  39 atcaatatccaccaactcagtaagcttgcagtctttgcatatattatggtttactattttcactatctttgatcagaaatcctttatccaaccaacagtc 138  Q
    ||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||  |||||    
T  29880214 atcaacatccaccaactcagtaagcttgcagtctt-gcatatctgatggtttactattttcactatctttgatccgaaatcctctatccaacc--cagtc 29880118  T
Q  139 atcccatgcacgaacacaag 158  Q
    || |||||||||||||||||    
T  29880117 at-ccatgcacgaacacaag 29880099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 29880045 - 29880012
Alignment:
Q  212 ccaatgctatattgcttccatcatattttccttt 245  Q
    ||||||||||||||||||||||||||||||||||    
T  29880045 ccaatgctatattgcttccatcatattttccttt 29880012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 19694611 - 19694687
Alignment:
Q  362 attggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataatta 438  Q
    |||||||||||||   |||||| | |||||| ||  |||||| | ||||||||||||||||||||||||| ||||||    
T  19694611 attggatggaatggattccattatgttccattcccttccattaattttttgcaaatccaaacaatggaatttaatta 19694687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 58038 - 58282
Alignment:
Q  1 attcttcatcgtcaattgtgagttctactaaacttactatcaatatccaccaactcagtaagcttgcagtctttgcatatattatggtttactattttca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  58038 attcttcatcgtcaattgtgagttctactaaacttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatgctttactattttca 58137  T
Q  101 ctatctttgatcagaaatcctttatccaaccaacagtcatcccatgcacgaacacaagttgtgccaaattcttccataagccagaatcacttgacttagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  58138 ctatctttgatcagaaatcctttatccaaccaacagtcatcccatgcacgaacacaagctgtgccaagttcttccataagccagaatcacttggcttagc 58237  T
Q  201 tattaccatatccaatgctatattgcttccatcatattttccttt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  58238 tattaccatatccaatgctatattgcttccatcatattttccttt 58282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 8e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 353 - 454
Target Start/End: Original strand, 26861401 - 26861502
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26861401 ttgggtggtattggatggaatgagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 26861500  T
Q  453 cc 454  Q
    ||    
T  26861501 cc 26861502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 608 - 676
Target Start/End: Complemental strand, 14065927 - 14065859
Alignment:
Q  608 tactagttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacct 676  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||    
T  14065927 tactagttttagaaccttattaattcttgaaccaaactaaagcaaaaaagatagcatgctagcctacct 14065859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 461
Target Start/End: Complemental strand, 3121310 - 3121207
Alignment:
Q  358 tggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccatc 457  Q
    ||||||||||||||||||| |||||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||  || | | ||||||||||||||     
T  3121310 tggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattccatt 3121211  T
Q  458 ccac 461  Q
    ||||    
T  3121210 ccac 3121207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 461
Target Start/End: Complemental strand, 35292131 - 35292024
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattc 453  Q
    ||||||||||||||| ||||||| | |||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||  || | | |||||||||||    
T  35292131 tgggtggtattggattgaatgagttacatcacactccattccattccattccttttttgcaaaaccaaacaatggaatatggttttatcccactccattc 35292032  T
Q  454 catcccac 461  Q
    ||| ||||    
T  35292031 cattccac 35292024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 35033863 - 35033937
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaat 431  Q
    |||||||||||||||||||| |||||   ||||||| ||| ||||||    ||||||||| ||||||||||||||    
T  35033863 gtggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaat 35033937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 46944129 - 46944055
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaat 431  Q
    |||||||||||||||||||| |||||   | ||||| ||| |||||||| ||||| || | ||||||||||||||    
T  46944129 gtggtattggatggaatgagttccatcacactccattccattccattcattttttacataaccaaacaatggaat 46944055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 8e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 353 - 454
Target Start/End: Original strand, 42117192 - 42117293
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42117192 ttgggtggtattggatggaatgagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 42117291  T
Q  453 cc 454  Q
    ||    
T  42117292 cc 42117293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 49741402 - 49741301
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49741402 ttgggtggtattggatggaatgagttccattgtattccatcccactccattcgctttttgcaaatccaaacaatggaatataattatgtaccactccatt 49741303  T
Q  453 cc 454  Q
    ||    
T  49741302 cc 49741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 378 - 461
Target Start/End: Original strand, 38761084 - 38761167
Alignment:
Q  378 tccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccatcccac 461  Q
    |||||| | |||||| |||||||||||| ||||  |||||||||||||| |||||||||||  |||||||  ||| ||||||||    
T  38761084 tccattattttccattccactccattcatttttaacaaatccaaacaatagaatataattaattaccactttatttcatcccac 38761167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 24020582 - 24020634
Alignment:
Q  378 tccattgtattccatcccactccattcactttttgcaaatccaaacaatggaa 430  Q
    |||||||| |||||| ||| |||| |||| |||||||||||||||||||||||    
T  24020582 tccattgtgttccattccattccactcacattttgcaaatccaaacaatggaa 24020634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 16302758 - 16302852
Alignment:
Q  362 attggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccat 456  Q
    ||||||||||||||| |||||   | ||||| ||| |||||||  ||||| |||| ||||||||||||||||  || | | ||||||||||||||    
T  16302758 attggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaacaatggaatatggttttatcccactccattccat 16302852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 50139607 - 50139684
Alignment:
Q  356 ggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 433  Q
    |||||||| ||||||||||   |||||  |||||||| |||||||||| |  |||| ||||||||||||| |||||||    
T  50139607 ggtggtataggatggaatggattccatcttattccattccactccattaaaattttacaaatccaaacaacggaatat 50139684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 11354855 - 11354754
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11354855 ttgggtggtattggatggaatcagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 11354756  T
Q  453 cc 454  Q
    ||    
T  11354755 cc 11354754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 356 - 456
Target Start/End: Complemental strand, 24945074 - 24944974
Alignment:
Q  356 ggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattcca 455  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945074 ggtggtattggatggaatgagttccattgtattccattccactcgagtcactttttgcaaatccaaacaatggaatataattatgtaccactccattcca 24944975  T
Q  456 t 456  Q
    |    
T  24944974 t 24944974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 36274288 - 36274351
Alignment:
Q  394 ccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccatc 457  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  36274288 ccactccattcactttttgcaaatccaaacaatgaaatataattatataccactccattccatc 36274351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 457
Target Start/End: Complemental strand, 13476875 - 13476786
Alignment:
Q  368 tggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccatc 457  Q
    ||||||||| |||||| | | |||| |||||||||||| ||||  ||||||||||||||| || |||||||  ||| ||| |||||||||    
T  13476875 tggaatgagctccattatgtaccattccactccattcatttttaacaaatccaaacaatgaaacataattaattactacttcattccatc 13476786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 42025396 - 42025495
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccat 456  Q
    |||||||||||||||||| | |||||   | ||||| | | |||||||| ||||| |||| ||||||||||||||||   ||| | ||||||||||||||    
T  42025396 gtggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaatatggatatatcccactccattccat 42025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 29844322 - 29844245
Alignment:
Q  356 ggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 433  Q
    |||||||| ||||||||||   |||||  ||||||||  ||||||||| |  |||| |||||||||||||||||||||    
T  29844322 ggtggtataggatggaatggattccatcatattccatttcactccattaaaattttacaaatccaaacaatggaatat 29844245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 8e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 353 - 457
Target Start/End: Complemental strand, 14567931 - 14567827
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14567931 ttggatggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 14567832  T
Q  453 ccatc 457  Q
    |||||    
T  14567831 ccatc 14567827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 356 - 457
Target Start/End: Original strand, 30813344 - 30813445
Alignment:
Q  356 ggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattcca 455  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  30813344 ggtggtattggatgaaatgagatccattgtattccatcccactccattaattttttacaaatctaaacaatggaatataattatgtaccactccattcca 30813443  T
Q  456 tc 457  Q
    ||    
T  30813444 tc 30813445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 526 - 629
Target Start/End: Original strand, 24207430 - 24207533
Alignment:
Q  526 aaagctttaattttgattcacttcactaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaacctt 625  Q
    ||||| |||||||||||||||||||||  |||||||||||  |||||| || | ||||||| | | |||||||||||| |||| ||||| ||||||||||    
T  24207430 aaagcattaattttgattcacttcacttgctattcaatctctcatcacctagttacaatttaatattgatttttatcatgtatgctagtattagaacctt 24207529  T
Q  626 atta 629  Q
    ||||    
T  24207530 atta 24207533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 354 - 456
Target Start/End: Original strand, 39439903 - 39440005
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattc 453  Q
    ||||||||||||||||||||||| |||||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||  || | | |||||||||||    
T  39439903 tgggtggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattc 39440002  T
Q  454 cat 456  Q
    |||    
T  39440003 cat 39440005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 25909428 - 25909351
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaat 431  Q
    ||||||||||||||||||||||| |||||| |||| |||  || ||||||||||| || |||| ||||||||||||||    
T  25909428 tgggtggtattggatggaatgagttccattatatttcatttcattccattcacttattacaaaaccaaacaatggaat 25909351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 25045455 - 25045381
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaat 431  Q
    |||||||||||||||||||| |||||   ||||||| ||| ||||||    ||||||||| ||||||||||||||    
T  25045455 gtggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaat 25045381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 32233090 - 32232989
Alignment:
Q  353 ttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccatt 452  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32233090 ttgggtggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactctatt 32232991  T
Q  453 cc 454  Q
    ||    
T  32232990 cc 32232989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 11617320 - 11617218
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattc 453  Q
    ||||||||||||||||||||||| |||||   | ||||| ||| |||||||| |||||||||| ||||||||||||||||  || | | |||||||||||    
T  11617320 tgggtggtattggatggaatgagttccatcacactccattccattccattcattttttgcaaaaccaaacaatggaatatggttttatcccactccattc 11617221  T
Q  454 cat 456  Q
    |||    
T  11617220 cat 11617218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 30084983 - 30084909
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaat 431  Q
    |||||||||||||||||||| |||||   ||||||| ||| ||||||    ||||||||| ||||||||||||||    
T  30084983 gtggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaat 30084909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 33447032 - 33446969
Alignment:
Q  394 ccactccattcactttttgcaaatccaaacaatggaatataattatgtaccactccattccatc 457  Q
    ||||||||||||||||||||   |||||||||||||| |||||||  |||||||||||||||||    
T  33447032 ccactccattcactttttgctggtccaaacaatggaacataattagttaccactccattccatc 33446969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 23417262 - 23417335
Alignment:
Q  357 gtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaa 430  Q
    |||||||||||||||||| | |||||  || ||||| ||| |||||||  ||||| |||| |||||||||||||    
T  23417262 gtggtattggatggaatgggttccatcatactccatgccattccattccttttttacaaaaccaaacaatggaa 23417335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 44162 - 44241
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 433  Q
    ||||||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| ||||||||||||||||    
T  44162 tgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatat 44241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 77883 - 77962
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 433  Q
    ||||||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| ||||||||||||||||    
T  77883 tgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatat 77962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 10354341 - 10354262
Alignment:
Q  354 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 433  Q
    ||||||||||||||||||||||| | ||| | | ||||| ||| |||||||  ||||||||||  |||||||| ||||||    
T  10354341 tgggtggtattggatggaatgagtttcatcgcactccattccattccattccttttttgcaaaatcaaacaatagaatat 10354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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