View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20237_low_10 (Length: 321)
Name: NF20237_low_10
Description: NF20237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20237_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 35 - 299
Target Start/End: Original strand, 17166500 - 17166764
Alignment:
| Q |
35 |
aatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaac |
134 |
Q |
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| T |
17166500 |
aatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaac |
17166599 |
T |
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| Q |
135 |
gagagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctaatccaaaagcaagtaaattataacct |
234 |
Q |
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| T |
17166600 |
gagagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctagtccaaaagcaagtaaattataacct |
17166699 |
T |
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| Q |
235 |
gatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaattcacttgc |
299 |
Q |
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| T |
17166700 |
gatatggtttgtgaaatactgttgataaccattgtcataccaagaaggtaagctaattcacttgc |
17166764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 17148756 - 17148823
Alignment:
| Q |
35 |
aatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacaccta |
102 |
Q |
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| T |
17148756 |
aatataataacatgccaagtttatgtaaccaaccataacttgccatccacatccaatgaccacaccta |
17148823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 17149013 - 17149118
Alignment:
| Q |
194 |
attaaactttttctaatccaa-aagcaagtaaattataacctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaatt |
292 |
Q |
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| T |
17149013 |
attaaactttttctagtcaaccaagcaagtaa-taatcacctgaaatagtttgtgagatactgttgataaccatggttataccaagaaggtatgctaatt |
17149111 |
T |
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| Q |
293 |
cacttgc |
299 |
Q |
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||||||| |
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| T |
17149112 |
cacttgc |
17149118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 17134900 - 17134965
Alignment:
| Q |
39 |
taatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctata |
104 |
Q |
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||||| ||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
17134900 |
taataacatcccaagtttatgtaaccaaccataacttgccatccacatccaatgaccacacctata |
17134965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 17135269 - 17135334
Alignment:
| Q |
231 |
acctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaattcact |
296 |
Q |
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||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||| |
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| T |
17135269 |
acctgatatagtttgtgaaatactgttgagaaccatggttataccaagaaaatatgctaattcact |
17135334 |
T |
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